Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5686

Experiment: Ying_OrganicAcid7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 1
2,709,367	+		GFF5685	0.82	-0.9
2,709,368	-		GFF5685	0.82	-0.2
2,709,410	-		GFF5685	0.83	-0.6
2,709,484	+		GFF5685	0.85	+0.2
2,709,484	+		GFF5685	0.85	+0.5
2,709,484	+		GFF5685	0.85	+0.8
2,709,484	+		GFF5685	0.85	-0.2
2,709,484	+		GFF5685	0.85	-0.4
2,709,484	+		GFF5685	0.85	+0.3
2,709,535	+		GFF5685	0.87	-0.3
2,709,536	+		GFF5685	0.87	-0.1
2,709,536	-		GFF5685	0.87	+0.5
2,709,536	-		GFF5685	0.87	+0.2
2,709,536	-		GFF5685	0.87	+0.1
2,709,536	-		GFF5685	0.87	-0.4
2,709,724	+				-0.1
2,709,725	-				+0.6
2,709,725	-				-0.9
2,709,808	+				-0.4
2,709,809	-				-0.1
2,709,809	-				+1.5
2,709,809	-				+0.0
2,709,809	-				-0.0
2,709,851	-				+0.3
2,709,851	-				+0.1
2,710,413	+		GFF5686	0.29	+0.0
2,710,413	+		GFF5686	0.29	-1.0
2,710,413	+		GFF5686	0.29	-0.1
2,710,413	+		GFF5686	0.29	+0.2
2,710,413	+		GFF5686	0.29	+0.8
2,710,413	+		GFF5686	0.29	-0.3
2,710,414	-		GFF5686	0.29	-0.3
2,710,414	-		GFF5686	0.29	-0.5
2,710,414	-		GFF5686	0.29	+0.2
2,710,414	-		GFF5686	0.29	-0.7
2,710,653	+		GFF5686	0.48	+0.2
2,710,653	+		GFF5686	0.48	-0.3
2,710,653	+		GFF5686	0.48	-1.9
2,710,653	+		GFF5686	0.48	-1.5
2,710,653	+		GFF5686	0.48	-0.2
2,710,654	-		GFF5686	0.48	+0.5
2,710,654	-		GFF5686	0.48	+0.2
2,710,654	-		GFF5686	0.48	+0.0
2,710,654	-		GFF5686	0.48	-0.2
2,710,774	-		GFF5686	0.57	-0.7
2,711,464	+				-0.4
2,711,746	+		GFF5687	0.14	+0.9
2,711,747	-		GFF5687	0.14	+0.9
2,711,749	+		GFF5687	0.14	-0.2
2,711,749	+		GFF5687	0.14	+0.5
2,712,197	-		GFF5687	0.59	-0.0