Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5536

Experiment: Ying_OrganicAcid7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 1
2,540,562	+				+0.5
2,540,563	-				-0.2
2,540,563	-				+0.2
2,540,830	-		GFF5535	0.36	+1.0
2,540,940	+		GFF5535	0.49	+0.1
2,541,246	+		GFF5535	0.86	+0.0
2,541,246	+		GFF5535	0.86	+0.6
2,541,246	+		GFF5535	0.86	-0.0
2,541,246	+		GFF5535	0.86	+0.6
2,541,246	+		GFF5535	0.86	-0.3
2,541,246	+		GFF5535	0.86	-0.9
2,541,246	+		GFF5535	0.86	+0.1
2,541,246	+		GFF5535	0.86	+0.4
2,541,247	-		GFF5535	0.86	+1.5
2,541,247	-		GFF5535	0.86	-1.6
2,541,365	+				-0.2
2,541,365	+				-0.3
2,541,462	+				+0.5
2,541,463	-				-0.6
2,541,644	+		GFF5536	0.10	+0.8
2,541,644	+		GFF5536	0.10	+0.3
2,541,645	-		GFF5536	0.10	-3.1
2,541,734	+		GFF5536	0.20	+0.2
2,541,746	+		GFF5536	0.21	+0.2
2,541,747	-		GFF5536	0.21	+0.1
2,541,747	-		GFF5536	0.21	-0.4
2,541,747	-		GFF5536	0.21	+0.6
2,541,930	-		GFF5536	0.41	-0.9
2,541,971	+		GFF5536	0.45	-0.4
2,541,971	+		GFF5536	0.45	-0.3
2,541,971	+		GFF5536	0.45	-0.4
2,541,972	-		GFF5536	0.45	-0.6
2,541,972	-		GFF5536	0.45	-0.2
2,541,972	-		GFF5536	0.45	+3.0
2,542,245	+		GFF5536	0.75	-0.1
2,542,515	-				+0.4
2,542,515	-				-0.3
2,542,555	-				-0.3
2,542,877	-		GFF5537	0.36	+0.2
2,542,877	-		GFF5537	0.36	-1.2
2,542,888	+		GFF5537	0.37	+0.0
2,542,888	+		GFF5537	0.37	-0.0
2,542,912	+		GFF5537	0.40	-0.3
2,543,122	+		GFF5537	0.64	-0.0
2,543,122	+		GFF5537	0.64	+0.6
2,543,122	+		GFF5537	0.64	-0.5
2,543,123	-		GFF5537	0.64	+0.1
2,543,123	-		GFF5537	0.64	+0.7
2,543,123	-		GFF5537	0.64	+0.5
2,543,198	-		GFF5537	0.73	+0.3
2,543,198	-		GFF5537	0.73	+0.8
2,543,198	-		GFF5537	0.73	-0.0
2,543,347	+				+0.3
2,543,347	+				-0.0
2,543,348	-				+0.2
2,543,348	-				-0.9
2,543,438	+				-0.1
2,543,466	+				-0.5