Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5516

Experiment: Ying_OrganicAcid7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 1
2,517,367	+				-0.1
2,517,367	+				+0.9
2,517,368	-				+0.0
2,517,368	-				+0.3
2,517,368	-				+0.1
2,517,368	-				-0.8
2,517,468	+				-0.2
2,517,468	+				+0.1
2,517,468	+				+0.0
2,517,469	-				+0.5
2,517,502	+				-0.5
2,517,502	+				-0.5
2,517,502	+				+0.2
2,517,503	-				-1.1
2,517,503	-				+1.5
2,517,503	-				-0.7
2,517,503	-				+0.1
2,517,503	-				+0.9
2,517,503	-				-0.5
2,517,503	-				+0.2
2,517,970	+		GFF5515	0.53	-0.1
2,517,971	-		GFF5515	0.53	-0.4
2,518,273	+				-0.1
2,518,273	+				+1.5
2,518,273	+				-0.5
2,518,273	+				+0.3
2,518,273	+				+1.5
2,518,274	-				-0.9
2,518,274	-				-0.6
2,518,274	-				-0.0
2,518,274	-				-0.1
2,518,375	+				+0.5
2,518,375	-				+0.2
2,518,576	+		GFF5516	0.24	-0.4
2,518,576	+		GFF5516	0.24	-0.7
2,518,576	+		GFF5516	0.24	+0.2
2,518,577	-		GFF5516	0.24	-0.3
2,518,577	-		GFF5516	0.24	+0.1
2,518,577	-		GFF5516	0.24	+0.5
2,518,597	+		GFF5516	0.26	+0.1
2,518,610	-		GFF5516	0.27	+0.4
2,518,610	-		GFF5516	0.27	-0.5
2,518,651	+		GFF5516	0.32	-0.2
2,518,651	+		GFF5516	0.32	+0.0
2,518,702	+		GFF5516	0.37	-0.6
2,518,702	+		GFF5516	0.37	-0.2
2,518,702	+		GFF5516	0.37	-0.6
2,518,702	+		GFF5516	0.37	+0.0
2,519,008	+		GFF5516	0.68	-0.0
2,519,008	+		GFF5516	0.68	-0.5
2,519,008	+		GFF5516	0.68	-0.4
2,519,008	+		GFF5516	0.68	-0.1
2,519,009	-		GFF5516	0.68	+0.1
2,519,009	-		GFF5516	0.68	-0.2
2,519,504	+				-0.4
2,519,633	+		GFF5517	0.12	-1.1
2,519,634	-		GFF5517	0.13	-0.6
2,519,634	-		GFF5517	0.13	-0.9
2,519,634	-		GFF5517	0.13	-0.9
2,519,888	+		GFF5517	0.27	-1.4
2,519,889	-		GFF5517	0.27	-0.6
2,519,889	-		GFF5517	0.27	-0.4
2,519,889	-		GFF5517	0.27	-0.1
2,519,889	-		GFF5517	0.27	-0.1
2,519,889	-		GFF5517	0.27	-0.2
2,519,889	-		GFF5517	0.27	-0.4
2,519,916	-		GFF5517	0.28	-0.4
2,519,918	+		GFF5517	0.28	+0.4
2,519,919	-		GFF5517	0.28	+0.4
2,520,008	+		GFF5517	0.33	-0.1
2,520,038	+		GFF5517	0.35	-0.3
2,520,038	+		GFF5517	0.35	+0.5
2,520,038	+		GFF5517	0.35	+0.8
2,520,039	-		GFF5517	0.35	-0.2
2,520,039	-		GFF5517	0.35	+0.6
2,520,096	-		GFF5517	0.38	+0.5
2,520,248	+		GFF5517	0.47	+0.2