Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5497

Experiment: Ying_OrganicAcid7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 1
2,500,365	-		GFF5496	0.30	+0.2
2,501,352	+		GFF5497	0.33	-1.9
2,501,352	+		GFF5497	0.33	-1.3
2,501,352	+		GFF5497	0.33	-6.7
2,501,352	+		GFF5497	0.33	-5.3
2,501,352	+		GFF5497	0.33	-2.5
2,501,352	+		GFF5497	0.33	-2.8
2,501,352	+		GFF5497	0.33	-4.6
2,501,353	-		GFF5497	0.33	-4.2
2,501,353	-		GFF5497	0.33	-6.7
2,501,577	+		GFF5497	0.48	-4.1
2,501,826	+		GFF5497	0.63	-3.4
2,501,826	+		GFF5497	0.63	-0.9
2,501,827	-		GFF5497	0.63	-6.0
2,501,827	-		GFF5497	0.63	-4.7
2,501,976	+		GFF5497	0.73	-5.9
2,501,976	+		GFF5497	0.73	-3.6
2,501,976	+		GFF5497	0.73	-1.1
2,501,977	-		GFF5497	0.73	-4.8
2,501,977	-		GFF5497	0.73	-1.9
2,501,977	-		GFF5497	0.73	-4.7
2,501,977	-		GFF5497	0.73	-3.8
2,501,977	-		GFF5497	0.73	-2.0
2,501,977	-		GFF5497	0.73	-5.1
2,501,977	-		GFF5497	0.73	-4.6
2,502,141	-		GFF5497	0.83	-4.3
2,502,141	-		GFF5497	0.83	-5.0
2,502,288	+				-4.2
2,502,288	+				-3.5
2,502,289	-				-2.4
2,502,289	-				-3.6
2,502,384	+				+0.1
2,502,436	-				+0.2
2,502,447	+				-1.1
2,502,449	+				-0.0
2,502,482	-				-1.0
2,502,489	+				-0.4
2,502,489	+				+0.0
2,502,490	-				-0.7
2,502,490	-				-1.3
2,502,563	-		GFF5498	0.12	-0.1
2,502,563	-		GFF5498	0.12	-0.3
2,502,563	-		GFF5498	0.12	-1.3
2,503,317	+		GFF5499	0.38	+0.1
2,503,317	+		GFF5499	0.38	-1.0
2,503,317	+		GFF5499	0.38	-0.6
2,503,317	+		GFF5499	0.38	-0.0
2,503,318	-		GFF5499	0.38	-0.2
2,503,318	-		GFF5499	0.38	-0.5
2,503,318	-		GFF5499	0.38	+0.2
2,503,318	-		GFF5499	0.38	-0.1
2,503,318	-		GFF5499	0.38	-0.2
2,503,318	-		GFF5499	0.38	+0.2