Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5280

Experiment: Ying_OrganicAcid7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 1
2,292,756	+				-2.7
2,292,757	-				-1.2
2,292,774	+				-0.1
2,292,775	-				+0.2
2,292,789	-				+0.6
2,292,882	+				+0.1
2,292,883	-				-0.1
2,292,883	-				-0.1
2,292,883	-				+0.0
2,292,883	-				-0.3
2,292,900	+				-0.4
2,292,901	-				-0.5
2,292,901	-				-0.5
2,292,901	-				-0.2
2,292,985	-				+0.5
2,293,116	+				+0.7
2,293,116	+				-0.3
2,293,117	-				-1.7
2,293,832	+		GFF5280	0.55	-2.2
2,293,833	-		GFF5280	0.55	-0.2
2,294,070	+				+0.0
2,294,224	+		GFF5281	0.48	+0.1
2,294,224	+		GFF5281	0.48	-1.1
2,294,225	-		GFF5281	0.48	+0.7
2,294,374	+		GFF5281	0.88	-0.4
2,294,375	-		GFF5281	0.88	+0.0
2,294,375	-		GFF5281	0.88	+0.5
2,294,384	-				+0.9
2,294,589	+		GFF5282	0.40	-0.7
2,294,589	+		GFF5282	0.40	-0.3
2,294,590	-		GFF5282	0.41	-0.4
2,294,598	+		GFF5282	0.42	-1.3
2,294,625	+		GFF5282	0.49	+0.4
2,294,625	+		GFF5282	0.49	-0.5
2,294,626	-		GFF5282	0.49	-0.0
2,294,626	-		GFF5282	0.49	+0.9
2,294,709	+		GFF5282	0.69	+0.9
2,294,995	+		GFF5283	0.28	+0.2