Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF526

Experiment: Ying_OrganicAcid7 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF525 and GFF526 are separated by 78 nucleotidesGFF526 and GFF527 are separated by 57 nucleotidesGFF527 and GFF528 are separated by 83 nucleotides GFF525 - glutamine synthetase family protein, at 192,265 to 193,650 GFF525 GFF526 - Heat shock protease, at 193,729 to 194,607 GFF526 GFF527 - FIG01200701: possible membrane protein, at 194,665 to 195,342 GFF527 GFF528 - Transcriptional regulator, AraC family, at 195,426 to 196,520 GFF528 Position (kb) 193 194 195Strain fitness (log2 ratio) -2 -1 0 1 2at 192.928 kb on + strand, within GFF525at 192.929 kb on - strand, within GFF525at 192.929 kb on - strand, within GFF525at 192.929 kb on - strand, within GFF525at 193.162 kb on + strand, within GFF525at 193.162 kb on + strand, within GFF525at 193.162 kb on + strand, within GFF525at 193.162 kb on + strand, within GFF525at 193.162 kb on + strand, within GFF525at 193.162 kb on + strand, within GFF525at 193.162 kb on + strand, within GFF525at 193.163 kb on - strand, within GFF525at 193.163 kb on - strand, within GFF525at 193.163 kb on - strand, within GFF525at 193.163 kb on - strand, within GFF525at 193.163 kb on - strand, within GFF525at 193.207 kb on + strand, within GFF525at 193.208 kb on - strand, within GFF525at 193.208 kb on - strand, within GFF525at 193.208 kb on - strand, within GFF525at 193.228 kb on + strand, within GFF525at 193.229 kb on - strand, within GFF525at 193.373 kb on - strand, within GFF525at 193.459 kb on + strand, within GFF525at 193.459 kb on + strand, within GFF525at 193.460 kb on - strand, within GFF525at 193.564 kb on + strandat 193.565 kb on - strandat 193.565 kb on - strandat 193.688 kb on + strandat 193.688 kb on + strandat 193.688 kb on + strandat 193.688 kb on + strandat 193.688 kb on + strandat 193.688 kb on + strandat 193.688 kb on + strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.708 kb on + strandat 193.712 kb on + strandat 193.712 kb on + strandat 194.317 kb on + strand, within GFF526at 194.317 kb on + strand, within GFF526at 194.317 kb on + strand, within GFF526at 194.317 kb on + strand, within GFF526at 194.317 kb on + strand, within GFF526at 194.317 kb on + strand, within GFF526at 194.318 kb on - strand, within GFF526at 194.321 kb on - strand, within GFF526at 194.635 kb on + strandat 194.635 kb on + strandat 194.635 kb on + strandat 194.635 kb on + strandat 194.636 kb on - strandat 194.636 kb on - strandat 194.636 kb on - strandat 194.705 kb on + strandat 194.705 kb on + strandat 194.706 kb on - strandat 194.708 kb on + strandat 194.768 kb on + strand, within GFF527at 194.771 kb on + strand, within GFF527at 194.771 kb on + strand, within GFF527at 194.771 kb on + strand, within GFF527at 194.771 kb on + strand, within GFF527at 194.771 kb on + strand, within GFF527at 194.771 kb on + strand, within GFF527at 194.771 kb on + strand, within GFF527at 194.771 kb on + strand, within GFF527at 194.771 kb on + strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.810 kb on + strand, within GFF527at 194.810 kb on + strand, within GFF527at 194.810 kb on + strand, within GFF527at 194.811 kb on - strand, within GFF527at 194.811 kb on - strand, within GFF527at 194.828 kb on + strand, within GFF527at 194.828 kb on + strand, within GFF527at 194.828 kb on + strand, within GFF527at 194.829 kb on - strand, within GFF527at 194.837 kb on + strand, within GFF527at 194.838 kb on - strand, within GFF527at 194.838 kb on - strand, within GFF527at 194.838 kb on - strand, within GFF527at 194.939 kb on + strand, within GFF527at 194.945 kb on + strand, within GFF527at 194.945 kb on + strand, within GFF527at 194.946 kb on - strand, within GFF527at 194.946 kb on - strand, within GFF527at 194.957 kb on + strand, within GFF527at 194.957 kb on + strand, within GFF527at 194.979 kb on - strand, within GFF527at 194.979 kb on - strand, within GFF527at 194.979 kb on - strand, within GFF527at 195.017 kb on + strand, within GFF527at 195.017 kb on + strand, within GFF527at 195.179 kb on + strand, within GFF527at 195.179 kb on + strand, within GFF527at 195.179 kb on + strand, within GFF527at 195.179 kb on + strand, within GFF527at 195.179 kb on + strand, within GFF527at 195.180 kb on - strand, within GFF527at 195.355 kb on - strandat 195.362 kb on + strandat 195.409 kb on + strandat 195.428 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1
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192,928 + GFF525 0.48 +0.3
192,929 - GFF525 0.48 +0.2
192,929 - GFF525 0.48 -0.3
192,929 - GFF525 0.48 +0.2
193,162 + GFF525 0.65 +0.8
193,162 + GFF525 0.65 -1.1
193,162 + GFF525 0.65 -0.4
193,162 + GFF525 0.65 -0.1
193,162 + GFF525 0.65 -0.3
193,162 + GFF525 0.65 +0.1
193,162 + GFF525 0.65 -0.6
193,163 - GFF525 0.65 -0.0
193,163 - GFF525 0.65 -0.7
193,163 - GFF525 0.65 +0.2
193,163 - GFF525 0.65 +0.2
193,163 - GFF525 0.65 +0.2
193,207 + GFF525 0.68 +0.6
193,208 - GFF525 0.68 -0.7
193,208 - GFF525 0.68 -0.0
193,208 - GFF525 0.68 -0.3
193,228 + GFF525 0.69 +0.3
193,229 - GFF525 0.70 -0.4
193,373 - GFF525 0.80 -0.5
193,459 + GFF525 0.86 -0.2
193,459 + GFF525 0.86 +0.3
193,460 - GFF525 0.86 -1.4
193,564 + -0.0
193,565 - +0.6
193,565 - +0.1
193,688 + +0.5
193,688 + -0.7
193,688 + +0.2
193,688 + -1.3
193,688 + -0.7
193,688 + +0.5
193,688 + -0.5
193,689 - +1.2
193,689 - -0.1
193,689 - -0.6
193,689 - -1.1
193,689 - -0.4
193,689 - -1.2
193,689 - -0.3
193,689 - +0.3
193,689 - +0.4
193,689 - -0.1
193,689 - -0.9
193,708 + +0.3
193,712 + +0.5
193,712 + -0.5
194,317 + GFF526 0.67 -0.3
194,317 + GFF526 0.67 +0.0
194,317 + GFF526 0.67 -0.4
194,317 + GFF526 0.67 -0.8
194,317 + GFF526 0.67 -0.1
194,317 + GFF526 0.67 +0.2
194,318 - GFF526 0.67 +0.4
194,321 - GFF526 0.67 -2.1
194,635 + -0.2
194,635 + -0.1
194,635 + -0.0
194,635 + +0.3
194,636 - +0.0
194,636 - -0.1
194,636 - +0.7
194,705 + +0.1
194,705 + +0.4
194,706 - -0.1
194,708 + +0.1
194,768 + GFF527 0.15 -0.2
194,771 + GFF527 0.16 +0.0
194,771 + GFF527 0.16 -0.2
194,771 + GFF527 0.16 +0.6
194,771 + GFF527 0.16 +0.1
194,771 + GFF527 0.16 +1.1
194,771 + GFF527 0.16 -2.2
194,771 + GFF527 0.16 +1.5
194,771 + GFF527 0.16 +0.3
194,771 + GFF527 0.16 +0.0
194,772 - GFF527 0.16 -0.1
194,772 - GFF527 0.16 -0.0
194,772 - GFF527 0.16 +0.3
194,772 - GFF527 0.16 +0.8
194,772 - GFF527 0.16 +1.0
194,772 - GFF527 0.16 +0.3
194,772 - GFF527 0.16 -0.3
194,772 - GFF527 0.16 -0.2
194,772 - GFF527 0.16 +0.4
194,772 - GFF527 0.16 +0.3
194,772 - GFF527 0.16 -0.3
194,772 - GFF527 0.16 +0.3
194,772 - GFF527 0.16 -0.9
194,772 - GFF527 0.16 +0.2
194,772 - GFF527 0.16 -0.6
194,810 + GFF527 0.21 +0.4
194,810 + GFF527 0.21 -1.3
194,810 + GFF527 0.21 -0.4
194,811 - GFF527 0.22 +0.2
194,811 - GFF527 0.22 -0.6
194,828 + GFF527 0.24 +0.3
194,828 + GFF527 0.24 -0.0
194,828 + GFF527 0.24 +2.3
194,829 - GFF527 0.24 +0.4
194,837 + GFF527 0.25 +0.5
194,838 - GFF527 0.26 +0.1
194,838 - GFF527 0.26 -0.2
194,838 - GFF527 0.26 -0.3
194,939 + GFF527 0.40 +1.2
194,945 + GFF527 0.41 +0.2
194,945 + GFF527 0.41 +0.0
194,946 - GFF527 0.41 +0.2
194,946 - GFF527 0.41 -2.2
194,957 + GFF527 0.43 -0.4
194,957 + GFF527 0.43 -0.3
194,979 - GFF527 0.46 +0.0
194,979 - GFF527 0.46 -0.1
194,979 - GFF527 0.46 +0.1
195,017 + GFF527 0.52 -0.1
195,017 + GFF527 0.52 -0.2
195,179 + GFF527 0.76 -0.4
195,179 + GFF527 0.76 +0.2
195,179 + GFF527 0.76 -0.4
195,179 + GFF527 0.76 -1.0
195,179 + GFF527 0.76 -0.1
195,180 - GFF527 0.76 -0.4
195,355 - -0.2
195,362 + +1.5
195,409 + +0.1
195,428 - +0.7

Or see this region's nucleotide sequence