Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4850

Experiment: Ying_OrganicAcid7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 1
1,855,745	+		GFF4848	0.34	-1.0
1,855,745	+		GFF4848	0.34	-0.2
1,855,745	+		GFF4848	0.34	-0.2
1,855,746	-		GFF4848	0.35	+0.3
1,855,805	+		GFF4848	0.40	-0.0
1,855,806	-		GFF4848	0.40	-0.2
1,855,930	+		GFF4848	0.52	-0.2
1,855,930	+		GFF4848	0.52	+0.2
1,855,931	-		GFF4848	0.52	+0.3
1,856,018	+		GFF4848	0.60	-0.6
1,856,018	+		GFF4848	0.60	+0.3
1,856,018	+		GFF4848	0.60	+0.6
1,856,019	-		GFF4848	0.60	+0.5
1,856,019	-		GFF4848	0.60	+0.6
1,856,019	-		GFF4848	0.60	+1.5
1,856,019	-		GFF4848	0.60	-0.2
1,856,019	-		GFF4848	0.60	+0.1
1,856,019	-		GFF4848	0.60	-0.5
1,856,019	-		GFF4848	0.60	+0.6
1,856,019	-		GFF4848	0.60	+0.6
1,856,019	-		GFF4848	0.60	+0.0
1,856,019	-		GFF4848	0.60	+0.3
1,856,019	-		GFF4848	0.60	-0.1
1,856,150	+		GFF4848	0.72	+1.8
1,856,150	+		GFF4848	0.72	-0.3
1,856,151	-		GFF4848	0.72	-0.6
1,856,151	-		GFF4848	0.72	+0.7
1,856,300	+		GFF4848	0.86	+0.3
1,856,300	+		GFF4848	0.86	-0.1
1,856,300	+		GFF4848	0.86	+0.1
1,856,301	-		GFF4848	0.86	+0.5
1,856,301	-		GFF4848	0.86	+0.1
1,856,312	+		GFF4848	0.87	+0.5
1,856,312	+		GFF4848	0.87	+1.2
1,856,312	+		GFF4848	0.87	+0.7
1,856,312	+		GFF4848	0.87	+0.6
1,856,312	+		GFF4848	0.87	-0.1
1,856,313	-		GFF4848	0.87	+0.2
1,856,313	-		GFF4848	0.87	-0.1
1,856,313	-		GFF4848	0.87	+0.3
1,856,313	-		GFF4848	0.87	-0.5
1,856,313	-		GFF4848	0.87	-0.1
1,856,313	-		GFF4848	0.87	-0.5
1,856,660	+		GFF4849	0.88	-0.8
1,856,664	+				+0.3
1,856,666	+				-0.6
1,856,666	+				-0.5
1,856,667	+				-0.4
1,856,667	-				-0.4
1,856,667	-				+0.4
1,856,667	-				-0.2
1,856,711	+				+0.1
1,856,711	+				-0.8
1,856,711	+				-0.8
1,856,711	+				+0.3
1,856,711	+				-0.7
1,856,712	-				+2.1
1,856,712	-				-0.1
1,856,712	-				+0.3
1,856,795	+				-1.3
1,856,795	+				+0.1
1,856,795	+				+0.6
1,856,795	+				-0.7
1,856,796	-				+0.2
1,856,847	+		GFF4850	0.11	+0.2
1,857,267	+		GFF4850	0.46	-0.8
1,857,267	+		GFF4850	0.46	-0.5
1,857,268	-		GFF4850	0.46	-0.7
1,857,525	+		GFF4850	0.68	-0.5
1,857,526	-		GFF4850	0.68	+0.5
1,857,585	+		GFF4850	0.73	-0.0
1,857,585	+		GFF4850	0.73	-0.6
1,857,586	-		GFF4850	0.73	+0.4
1,857,586	-		GFF4850	0.73	-0.1
1,857,750	+		GFF4850	0.87	+0.0
1,857,751	-		GFF4850	0.87	+0.5
1,857,751	-		GFF4850	0.87	+1.5
1,857,751	-		GFF4850	0.87	-1.4
1,857,751	-		GFF4850	0.87	-0.1
1,857,751	-		GFF4850	0.87	-0.1
1,857,751	-		GFF4850	0.87	-0.2
1,857,751	-		GFF4850	0.87	+0.1
1,857,751	-		GFF4850	0.87	-0.1
1,857,757	-		GFF4850	0.87	-0.4
1,857,828	+				-0.3
1,857,828	+				+0.1
1,857,828	+				-0.1
1,857,828	+				+0.2
1,857,828	+				-0.4
1,857,829	-				+0.2
1,857,829	-				-1.0
1,857,829	-				-1.7
1,857,829	-				+0.2
1,857,829	-				+0.3
1,857,829	-				-0.0
1,857,870	+				-0.1
1,857,870	+				-0.2
1,857,870	+				-0.8
1,857,870	+				+0.4
1,857,870	+				-1.3
1,857,870	+				-0.3
1,857,870	+				-1.2
1,857,870	+				+0.7
1,857,871	+				-1.7
1,857,871	-				-0.3
1,857,871	-				-0.5
1,857,871	-				-0.8
1,857,871	-				-0.3
1,857,962	+				-0.5
1,857,962	+				+0.1
1,858,085	+		GFF4851	0.32	-1.7
1,858,085	+		GFF4851	0.32	+0.5
1,858,085	+		GFF4851	0.32	+0.9
1,858,086	-		GFF4851	0.32	+1.1
1,858,086	-		GFF4851	0.32	+1.0
1,858,086	-		GFF4851	0.32	-0.7
1,858,086	-		GFF4851	0.32	-0.6
1,858,086	-		GFF4851	0.32	+0.2
1,858,086	-		GFF4851	0.32	+0.6
1,858,086	-		GFF4851	0.32	-0.5
1,858,086	-		GFF4851	0.32	-0.4
1,858,193	+		GFF4851	0.53	-0.3
1,858,193	+		GFF4851	0.53	-3.5
1,858,194	-		GFF4851	0.53	-0.4
1,858,194	-		GFF4851	0.53	-0.6
1,858,194	-		GFF4851	0.53	-1.1
1,858,394	+				-0.0
1,858,404	-				-0.6
1,858,412	+				-0.7
1,858,412	+				-0.1
1,858,412	+				-0.6
1,858,412	+				-0.8
1,858,412	+				-0.5
1,858,413	-				-0.0
1,858,413	-				-0.1
1,858,413	-				-1.3
1,858,518	-				-0.7
1,858,518	-				+0.2