Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4759

Experiment: Ying_OrganicAcid7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 1
1,764,494	+		GFF4757	0.32	+0.2
1,764,494	+		GFF4757	0.32	+0.0
1,764,536	+		GFF4757	0.37	-1.1
1,764,536	+		GFF4757	0.37	+1.0
1,764,536	+		GFF4757	0.37	-0.4
1,764,537	-		GFF4757	0.37	+0.1
1,764,545	+		GFF4757	0.38	+1.0
1,764,545	+		GFF4757	0.38	-0.5
1,764,546	-		GFF4757	0.38	+0.5
1,764,638	+		GFF4757	0.49	+0.1
1,764,642	-		GFF4757	0.50	-0.3
1,764,649	+		GFF4757	0.50	-1.2
1,764,692	+		GFF4757	0.55	+0.3
1,764,693	-		GFF4757	0.55	+0.5
1,764,693	-		GFF4757	0.55	+0.2
1,764,770	+		GFF4757	0.64	+1.7
1,764,770	+		GFF4757	0.64	-0.1
1,764,818	+		GFF4757	0.70	+0.2
1,764,818	+		GFF4757	0.70	-0.4
1,764,818	+		GFF4757	0.70	-0.0
1,764,818	+		GFF4757	0.70	+0.1
1,764,818	+		GFF4757	0.70	-0.4
1,764,819	-		GFF4757	0.70	+0.1
1,764,819	-		GFF4757	0.70	-0.2
1,764,819	-		GFF4757	0.70	-1.0
1,764,929	+		GFF4757	0.83	+0.5
1,764,929	+		GFF4757	0.83	-0.3
1,764,929	+		GFF4757	0.83	-0.0
1,764,929	+		GFF4757	0.83	-0.5
1,764,929	+		GFF4757	0.83	-0.6
1,764,930	-		GFF4757	0.83	+0.1
1,764,930	-		GFF4757	0.83	-0.1
1,764,930	-		GFF4757	0.83	+0.0
1,764,930	-		GFF4757	0.83	-0.4
1,764,930	-		GFF4757	0.83	-0.8
1,765,125	-				-0.4
1,765,210	+		GFF4758	0.28	+0.4
1,765,211	-		GFF4758	0.28	-0.1
1,765,273	+		GFF4758	0.67	-1.3
1,765,274	-		GFF4758	0.67	+0.5
1,765,274	-		GFF4758	0.67	-0.3
1,765,274	-		GFF4758	0.67	+0.1
1,765,274	-		GFF4758	0.67	-0.6
1,765,391	+				+0.6
1,765,391	+				+0.0
1,765,391	+				+0.5
1,765,392	-				-0.0
1,765,392	-				-1.2
1,765,564	+		GFF4759	0.12	+0.1
1,765,564	+		GFF4759	0.12	+0.1
1,765,564	+		GFF4759	0.12	+0.4
1,765,565	-		GFF4759	0.12	+0.8
1,765,565	-		GFF4759	0.12	-0.0
1,765,834	+		GFF4759	0.31	+0.5
1,765,834	+		GFF4759	0.31	+0.1
1,765,861	+		GFF4759	0.33	+0.0
1,765,861	+		GFF4759	0.33	+1.1
1,765,930	+		GFF4759	0.37	+0.4
1,765,930	+		GFF4759	0.37	+0.7
1,765,930	+		GFF4759	0.37	+0.2
1,765,931	-		GFF4759	0.38	+1.5
1,765,939	+		GFF4759	0.38	-0.6
1,765,939	+		GFF4759	0.38	+0.6
1,765,940	-		GFF4759	0.38	+0.6
1,765,940	-		GFF4759	0.38	+0.4
1,765,988	-		GFF4759	0.41	-0.3
1,766,019	+		GFF4759	0.44	+1.2
1,766,019	+		GFF4759	0.44	+0.5
1,766,020	-		GFF4759	0.44	+0.1
1,766,020	-		GFF4759	0.44	-0.3
1,766,098	+		GFF4759	0.49	+0.5
1,766,134	+		GFF4759	0.51	-0.1
1,766,135	-		GFF4759	0.52	+1.0
1,766,135	-		GFF4759	0.52	+0.4
1,766,161	+		GFF4759	0.53	+0.7
1,766,162	-		GFF4759	0.53	+1.1
1,766,162	-		GFF4759	0.53	-0.2
1,766,162	-		GFF4759	0.53	-0.3
1,766,176	+		GFF4759	0.54	+0.2
1,766,239	+		GFF4759	0.59	+0.9
1,766,239	+		GFF4759	0.59	+1.1
1,766,239	+		GFF4759	0.59	+1.5
1,766,239	+		GFF4759	0.59	-0.2
1,766,239	+		GFF4759	0.59	-0.1
1,766,239	+		GFF4759	0.59	-0.0
1,766,240	-		GFF4759	0.59	+0.3
1,766,240	-		GFF4759	0.59	+0.5
1,766,496	+		GFF4759	0.76	+0.0
1,766,554	+		GFF4759	0.80	-0.0
1,766,554	+		GFF4759	0.80	+0.9
1,766,555	-		GFF4759	0.80	+0.6
1,766,555	-		GFF4759	0.80	+0.1
1,766,555	-		GFF4759	0.80	-0.0
1,766,575	+		GFF4759	0.82	+0.6
1,766,575	+		GFF4759	0.82	-0.0
1,766,575	+		GFF4759	0.82	-0.1
1,766,576	-		GFF4759	0.82	-0.1
1,766,576	-		GFF4759	0.82	+0.9
1,766,656	+		GFF4759	0.87	+0.5
1,766,671	+		GFF4759	0.88	+0.0
1,766,671	+		GFF4759	0.88	-0.4
1,766,671	+		GFF4759	0.88	+0.5
1,766,671	+		GFF4759	0.88	-1.5
1,766,671	+		GFF4759	0.88	+0.1
1,766,671	+		GFF4759	0.88	+0.4
1,766,671	+		GFF4759	0.88	+0.3
1,766,672	-		GFF4759	0.88	+0.3
1,766,672	-		GFF4759	0.88	+0.2
1,766,672	-		GFF4759	0.88	+0.3
1,766,672	-		GFF4759	0.88	+0.8
1,766,740	+				+0.2
1,766,740	+				+0.4
1,766,740	+				+0.2
1,766,741	-				+0.7
1,766,741	-				+0.5
1,766,741	-				+0.2
1,766,940	+				+0.2
1,766,940	+				+0.1
1,766,940	+				+1.0
1,766,955	+		GFF4760	0.10	+1.1
1,766,955	+		GFF4760	0.10	+0.2
1,766,956	-		GFF4760	0.10	+0.4
1,767,606	+		GFF4760	0.58	+0.3
1,767,607	-		GFF4760	0.59	+0.6
1,767,612	+		GFF4760	0.59	+0.3
1,767,613	-		GFF4760	0.59	+0.9
1,767,613	-		GFF4760	0.59	+0.2
1,767,613	-		GFF4760	0.59	-0.5
1,767,615	+		GFF4760	0.59	-0.5
1,767,615	+		GFF4760	0.59	+0.3
1,767,616	-		GFF4760	0.59	+0.4
1,767,616	-		GFF4760	0.59	+0.9
1,767,616	-		GFF4760	0.59	+0.3
1,767,616	-		GFF4760	0.59	+0.4