Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4649

Experiment: Ying_OrganicAcid7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 1
1,597,949	+		GFF4648	0.17	+0.6
1,597,950	-		GFF4648	0.17	+0.1
1,597,950	-		GFF4648	0.17	-0.4
1,597,977	-		GFF4648	0.20	-1.9
1,598,523	-		GFF4648	0.71	+0.2
1,598,570	+		GFF4648	0.76	-0.7
1,598,609	+		GFF4648	0.80	-0.2
1,598,645	+		GFF4648	0.83	+1.1
1,598,646	-		GFF4648	0.83	-0.5
1,598,845	+				+0.0
1,599,098	+		GFF4649	0.11	+1.0
1,599,098	+		GFF4649	0.11	-0.3
1,599,099	-		GFF4649	0.11	-0.8
1,599,224	+		GFF4649	0.16	+0.7
1,599,224	+		GFF4649	0.16	+0.7
1,599,572	+		GFF4649	0.30	-0.5
1,599,572	+		GFF4649	0.30	-0.2
1,599,582	-		GFF4649	0.31	+0.0
1,599,582	-		GFF4649	0.31	+0.2
1,600,041	-		GFF4649	0.49	-0.1
1,600,251	-		GFF4649	0.58	+0.6
1,600,391	+		GFF4649	0.64	+1.7
1,600,392	-		GFF4649	0.64	-0.8
1,600,700	+		GFF4649	0.76	-0.3
1,600,700	+		GFF4649	0.76	+0.3
1,600,700	+		GFF4649	0.76	-0.2
1,600,700	+		GFF4649	0.76	-0.8
1,600,701	-		GFF4649	0.76	-0.9
1,600,701	-		GFF4649	0.76	-0.3
1,600,701	-		GFF4649	0.76	-0.1
1,601,022	+		GFF4649	0.89	+0.1
1,601,022	+		GFF4649	0.89	+0.8
1,601,022	+		GFF4649	0.89	+0.5
1,601,022	+		GFF4649	0.89	+0.5
1,601,022	+		GFF4649	0.89	+0.1
1,601,022	+		GFF4649	0.89	+0.2
1,601,022	+		GFF4649	0.89	-0.4
1,601,023	-		GFF4649	0.89	+0.0
1,601,023	-		GFF4649	0.89	-0.1
1,601,023	-		GFF4649	0.89	+0.2
1,601,190	-				-0.0
1,601,344	+				+0.3
1,601,633	+		GFF4650	0.61	-0.1
1,601,634	-		GFF4650	0.62	-0.1
1,601,634	-		GFF4650	0.62	-0.6
1,601,638	+		GFF4650	0.63	+0.2
1,601,638	+		GFF4650	0.63	-1.1
1,601,638	+		GFF4650	0.63	-0.1
1,601,638	+		GFF4650	0.63	-0.0
1,601,638	+		GFF4650	0.63	-0.2
1,601,638	+		GFF4650	0.63	-0.3
1,601,638	+		GFF4650	0.63	-0.5
1,601,638	+		GFF4650	0.63	+0.8
1,601,638	+		GFF4650	0.63	+0.2
1,601,638	+		GFF4650	0.63	-0.6
1,601,638	+		GFF4650	0.63	-0.3
1,601,638	+		GFF4650	0.63	+0.2
1,601,639	-		GFF4650	0.63	+0.0
1,601,639	-		GFF4650	0.63	-0.3
1,601,639	-		GFF4650	0.63	+0.5
1,601,639	-		GFF4650	0.63	-0.8
1,601,639	-		GFF4650	0.63	+0.0
1,601,639	-		GFF4650	0.63	+0.2
1,601,639	-		GFF4650	0.63	+0.1
1,601,800	+				-0.5
1,601,801	-				-1.5
1,601,836	+				+1.9
1,601,837	-				-0.6
1,601,875	+				-0.1
1,601,875	+				+1.5
1,601,875	+				-0.5
1,601,879	+				-0.1
1,601,880	-				+0.0
1,601,880	-				+1.0
1,601,880	-				-0.8
1,601,880	-				+0.3
1,602,161	+		GFF4651	0.14	+0.9
1,602,161	+		GFF4651	0.14	+1.1
1,602,161	+		GFF4651	0.14	-1.0
1,602,162	-		GFF4651	0.15	+0.2
1,602,162	-		GFF4651	0.15	-0.1
1,602,162	-		GFF4651	0.15	-0.2
1,602,162	-		GFF4651	0.15	-0.1
1,602,221	+		GFF4651	0.18	-0.6