Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4315

Experiment: Ying_OrganicAcid7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 1
1,242,053	+		GFF4314	0.32	+0.9
1,242,053	+		GFF4314	0.32	+0.0
1,242,062	+		GFF4314	0.33	-0.3
1,242,063	-		GFF4314	0.34	+0.5
1,242,065	+		GFF4314	0.34	+0.2
1,242,066	-		GFF4314	0.34	+0.3
1,242,066	-		GFF4314	0.34	-0.2
1,242,215	+		GFF4314	0.54	-0.4
1,242,215	+		GFF4314	0.54	-0.1
1,242,215	+		GFF4314	0.54	-0.1
1,242,216	-		GFF4314	0.54	-0.3
1,242,216	-		GFF4314	0.54	+0.1
1,242,216	-		GFF4314	0.54	+0.1
1,242,216	-		GFF4314	0.54	+0.4
1,242,216	-		GFF4314	0.54	-0.3
1,242,260	+		GFF4314	0.60	-0.3
1,242,588	+				+0.3
1,242,589	-				+0.0
1,243,376	+		GFF4315	0.36	+0.5
1,243,377	-		GFF4315	0.36	-0.8
1,243,377	-		GFF4315	0.36	-1.0
1,243,377	-		GFF4315	0.36	+0.0
1,243,377	-		GFF4315	0.36	+1.5
1,243,517	+		GFF4315	0.42	+0.9
1,243,649	+		GFF4315	0.49	+1.3
1,243,649	+		GFF4315	0.49	+0.8
1,243,649	+		GFF4315	0.49	+1.7
1,243,650	-		GFF4315	0.49	-0.8
1,243,863	-		GFF4315	0.58	-0.1
1,243,863	-		GFF4315	0.58	-0.1
1,244,313	-		GFF4315	0.79	-0.4
1,244,313	-		GFF4315	0.79	+0.8
1,244,414	+		GFF4315	0.84	-0.6
1,244,414	+		GFF4315	0.84	-0.3
1,244,954	-		GFF4316	0.48	+0.5
1,245,070	+		GFF4316	0.71	-1.0
1,245,071	-		GFF4316	0.71	-0.8
1,245,166	+				+0.5
1,245,166	+				-0.3
1,245,167	-				-1.1
1,245,495	+		GFF4317	0.38	-0.2
1,245,495	+		GFF4317	0.38	-0.2
1,245,495	+		GFF4317	0.38	+0.7
1,245,496	-		GFF4317	0.38	-0.1
1,245,496	-		GFF4317	0.38	-0.3
1,245,496	-		GFF4317	0.38	+0.2
1,245,496	-		GFF4317	0.38	-0.7
1,245,599	+		GFF4317	0.52	-0.9
1,245,663	+		GFF4317	0.61	+0.0
1,245,664	-		GFF4317	0.61	-0.5
1,245,664	-		GFF4317	0.61	+0.1