Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4049 and GFF4050 are separated by 12 nucleotides GFF4050 and GFF4051 are separated by 10 nucleotides GFF4051 and GFF4052 overlap by 4 nucleotides GFF4052 and GFF4053 are separated by 0 nucleotides
GFF4049 - hypothetical protein, at 968,610 to 969,227
GFF4049
GFF4050 - hypothetical protein, at 969,240 to 969,977
GFF4050
GFF4051 - hypothetical protein, at 969,988 to 970,341
GFF4051
GFF4052 - hypothetical protein, at 970,338 to 970,748
GFF4052
GFF4053 - Sensory box histidine kinase, at 970,749 to 972,344
GFF4053
Position (kb) 969
970
971 Strain fitness (log2 ratio) -1
0
1 at 969.267 kb on + strand at 969.267 kb on + strand at 969.267 kb on + strand at 969.268 kb on - strand at 969.268 kb on - strand at 969.330 kb on + strand, within GFF4050 at 969.330 kb on + strand, within GFF4050 at 969.330 kb on + strand, within GFF4050 at 969.331 kb on - strand, within GFF4050 at 969.331 kb on - strand, within GFF4050 at 969.331 kb on - strand, within GFF4050 at 969.861 kb on + strand, within GFF4050 at 969.861 kb on + strand, within GFF4050 at 969.861 kb on + strand, within GFF4050 at 969.861 kb on + strand, within GFF4050 at 969.861 kb on + strand, within GFF4050 at 969.862 kb on - strand, within GFF4050 at 969.862 kb on - strand, within GFF4050 at 969.862 kb on - strand, within GFF4050 at 970.813 kb on + strand at 970.907 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 969,267 + +0.3 969,267 + -0.7 969,267 + +0.0 969,268 - -1.4 969,268 - -0.3 969,330 + GFF4050 0.12 -0.6 969,330 + GFF4050 0.12 -0.5 969,330 + GFF4050 0.12 -0.9 969,331 - GFF4050 0.12 -1.1 969,331 - GFF4050 0.12 +0.2 969,331 - GFF4050 0.12 +0.2 969,861 + GFF4050 0.84 -0.5 969,861 + GFF4050 0.84 -0.0 969,861 + GFF4050 0.84 -0.4 969,861 + GFF4050 0.84 +0.1 969,861 + GFF4050 0.84 -0.5 969,862 - GFF4050 0.84 +0.2 969,862 - GFF4050 0.84 -0.1 969,862 - GFF4050 0.84 -0.2 970,813 + -0.1 970,907 - -0.4
Or see this region's nucleotide sequence