Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4023 and GFF4024 are separated by 252 nucleotides GFF4024 and GFF4025 are separated by 4 nucleotides GFF4025 and GFF4026 are separated by 60 nucleotides GFF4026 and GFF4027 are separated by 12 nucleotides
GFF4023 - PUTATIVE METHYLTRANSFERASE, at 938,432 to 939,244
GFF4023
GFF4024 - OsmC family protein, at 939,497 to 940,024
GFF4024
GFF4025 - Transcriptional regulator, AraC family, at 940,029 to 941,009
GFF4025
GFF4026 - Cytosine deaminase (EC 3.5.4.1), at 941,070 to 941,510
GFF4026
GFF4027 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 941,523 to 942,251
GFF4027
Position (kb) 940
941
942 Strain fitness (log2 ratio) -1
0
1 at 939.472 kb on + strand at 939.817 kb on + strand, within GFF4024 at 939.916 kb on - strand, within GFF4024 at 939.916 kb on - strand, within GFF4024 at 940.113 kb on + strand at 940.369 kb on - strand, within GFF4025 at 940.369 kb on - strand, within GFF4025 at 940.408 kb on - strand, within GFF4025 at 940.408 kb on - strand, within GFF4025 at 941.269 kb on - strand, within GFF4026 at 941.286 kb on + strand, within GFF4026 at 941.374 kb on - strand, within GFF4026 at 941.936 kb on - strand, within GFF4027
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 939,472 + -0.5 939,817 + GFF4024 0.61 -1.2 939,916 - GFF4024 0.79 -0.6 939,916 - GFF4024 0.79 -0.4 940,113 + -0.4 940,369 - GFF4025 0.35 +0.3 940,369 - GFF4025 0.35 -1.5 940,408 - GFF4025 0.39 +0.3 940,408 - GFF4025 0.39 +0.4 941,269 - GFF4026 0.45 +0.2 941,286 + GFF4026 0.49 -0.4 941,374 - GFF4026 0.69 -1.1 941,936 - GFF4027 0.57 +0.0
Or see this region's nucleotide sequence