Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3835

Experiment: Ying_OrganicAcid7 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3834 and GFF3835 overlap by 8 nucleotidesGFF3835 and GFF3836 are separated by 8 nucleotides GFF3834 - Probable transmembrane protein, at 741,053 to 742,465 GFF3834 GFF3835 - Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-), at 742,458 to 743,477 GFF3835 GFF3836 - DNA recombination protein RmuC, at 743,486 to 744,874 GFF3836 Position (kb) 742 743 744Strain fitness (log2 ratio) -2 -1 0 1at 741.716 kb on + strand, within GFF3834at 741.734 kb on + strand, within GFF3834at 741.737 kb on + strand, within GFF3834at 742.157 kb on + strand, within GFF3834at 742.157 kb on + strand, within GFF3834at 742.157 kb on + strand, within GFF3834at 742.157 kb on + strand, within GFF3834at 742.157 kb on + strand, within GFF3834at 742.157 kb on + strand, within GFF3834at 742.157 kb on + strand, within GFF3834at 742.157 kb on + strand, within GFF3834at 742.158 kb on - strand, within GFF3834at 742.158 kb on - strand, within GFF3834at 742.158 kb on - strand, within GFF3834at 742.158 kb on - strand, within GFF3834at 742.158 kb on - strand, within GFF3834at 742.208 kb on + strand, within GFF3834at 742.208 kb on + strand, within GFF3834at 742.208 kb on + strand, within GFF3834at 742.208 kb on + strand, within GFF3834at 742.208 kb on + strand, within GFF3834at 742.209 kb on - strand, within GFF3834at 742.209 kb on - strand, within GFF3834at 742.319 kb on + strand, within GFF3834at 742.319 kb on + strand, within GFF3834at 742.319 kb on + strand, within GFF3834at 742.319 kb on + strand, within GFF3834at 742.319 kb on + strand, within GFF3834at 742.319 kb on + strand, within GFF3834at 742.320 kb on - strand, within GFF3834at 742.320 kb on - strand, within GFF3834at 742.320 kb on - strand, within GFF3834at 742.320 kb on - strand, within GFF3834at 742.397 kb on + strandat 742.398 kb on - strandat 742.398 kb on - strandat 742.725 kb on + strand, within GFF3835at 742.725 kb on + strand, within GFF3835at 742.725 kb on + strand, within GFF3835at 742.726 kb on - strand, within GFF3835at 743.016 kb on + strand, within GFF3835at 743.016 kb on + strand, within GFF3835at 743.017 kb on - strand, within GFF3835at 743.017 kb on - strand, within GFF3835at 743.070 kb on + strand, within GFF3835at 743.070 kb on + strand, within GFF3835at 743.071 kb on - strand, within GFF3835at 743.286 kb on + strand, within GFF3835at 743.286 kb on + strand, within GFF3835at 743.286 kb on + strand, within GFF3835at 743.287 kb on - strand, within GFF3835at 743.287 kb on - strand, within GFF3835at 743.418 kb on + strandat 744.207 kb on - strand, within GFF3836at 744.336 kb on - strand, within GFF3836at 744.336 kb on - strand, within GFF3836at 744.336 kb on - strand, within GFF3836at 744.446 kb on + strand, within GFF3836at 744.446 kb on + strand, within GFF3836at 744.446 kb on + strand, within GFF3836at 744.446 kb on + strand, within GFF3836at 744.446 kb on + strand, within GFF3836at 744.446 kb on + strand, within GFF3836at 744.446 kb on + strand, within GFF3836at 744.447 kb on - strand, within GFF3836at 744.447 kb on - strand, within GFF3836

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1
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741,716 + GFF3834 0.47 -1.8
741,734 + GFF3834 0.48 +0.6
741,737 + GFF3834 0.48 +0.1
742,157 + GFF3834 0.78 +0.4
742,157 + GFF3834 0.78 +0.2
742,157 + GFF3834 0.78 -0.2
742,157 + GFF3834 0.78 -0.4
742,157 + GFF3834 0.78 -0.1
742,157 + GFF3834 0.78 -0.0
742,157 + GFF3834 0.78 -0.5
742,157 + GFF3834 0.78 -0.3
742,158 - GFF3834 0.78 -1.1
742,158 - GFF3834 0.78 +0.5
742,158 - GFF3834 0.78 +0.1
742,158 - GFF3834 0.78 +0.2
742,158 - GFF3834 0.78 +0.5
742,208 + GFF3834 0.82 -0.6
742,208 + GFF3834 0.82 +0.1
742,208 + GFF3834 0.82 +0.0
742,208 + GFF3834 0.82 -1.1
742,208 + GFF3834 0.82 +0.4
742,209 - GFF3834 0.82 -0.3
742,209 - GFF3834 0.82 +1.5
742,319 + GFF3834 0.90 -0.1
742,319 + GFF3834 0.90 -0.5
742,319 + GFF3834 0.90 +0.0
742,319 + GFF3834 0.90 -0.1
742,319 + GFF3834 0.90 -0.2
742,319 + GFF3834 0.90 +0.8
742,320 - GFF3834 0.90 -1.0
742,320 - GFF3834 0.90 -0.8
742,320 - GFF3834 0.90 -0.2
742,320 - GFF3834 0.90 +0.4
742,397 + -0.3
742,398 - +0.2
742,398 - +0.8
742,725 + GFF3835 0.26 -0.0
742,725 + GFF3835 0.26 -0.2
742,725 + GFF3835 0.26 +1.5
742,726 - GFF3835 0.26 -0.1
743,016 + GFF3835 0.55 +0.4
743,016 + GFF3835 0.55 +0.2
743,017 - GFF3835 0.55 +0.1
743,017 - GFF3835 0.55 +0.4
743,070 + GFF3835 0.60 +0.2
743,070 + GFF3835 0.60 +0.3
743,071 - GFF3835 0.60 +0.2
743,286 + GFF3835 0.81 +0.5
743,286 + GFF3835 0.81 +0.3
743,286 + GFF3835 0.81 +0.1
743,287 - GFF3835 0.81 -0.1
743,287 - GFF3835 0.81 +0.3
743,418 + +0.4
744,207 - GFF3836 0.52 -2.0
744,336 - GFF3836 0.61 -0.1
744,336 - GFF3836 0.61 -0.6
744,336 - GFF3836 0.61 +0.5
744,446 + GFF3836 0.69 -0.4
744,446 + GFF3836 0.69 -0.1
744,446 + GFF3836 0.69 +0.5
744,446 + GFF3836 0.69 +0.2
744,446 + GFF3836 0.69 -0.3
744,446 + GFF3836 0.69 -0.6
744,446 + GFF3836 0.69 -1.0
744,447 - GFF3836 0.69 +0.3
744,447 - GFF3836 0.69 -0.3

Or see this region's nucleotide sequence