Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3772 and GFF3773 are separated by 111 nucleotides GFF3773 and GFF3774 are separated by 14 nucleotides GFF3774 and GFF3775 are separated by 18 nucleotides
GFF3772 - FIG00349048: hypothetical protein, at 669,067 to 669,396
GFF3772
GFF3773 - Transcriptional regulator, MarR family, at 669,508 to 670,074
GFF3773
GFF3774 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 670,089 to 671,780
GFF3774
GFF3775 - Chlorogenate esterase, at 671,799 to 673,529
GFF3775
Position (kb) 670
671
672 Strain fitness (log2 ratio) -2
-1
0
1 at 669.436 kb on - strand at 669.437 kb on + strand at 669.437 kb on + strand at 669.437 kb on + strand at 669.437 kb on + strand at 669.438 kb on - strand at 669.460 kb on + strand at 669.460 kb on + strand at 669.502 kb on - strand at 669.542 kb on + strand at 669.543 kb on - strand at 669.644 kb on + strand, within GFF3773 at 669.645 kb on - strand, within GFF3773 at 669.920 kb on + strand, within GFF3773 at 669.921 kb on - strand, within GFF3773 at 669.941 kb on + strand, within GFF3773 at 669.942 kb on - strand, within GFF3773 at 670.090 kb on + strand at 670.090 kb on + strand at 670.090 kb on + strand at 670.090 kb on + strand at 670.091 kb on - strand at 670.091 kb on - strand at 670.477 kb on + strand, within GFF3774 at 670.478 kb on - strand, within GFF3774 at 670.478 kb on - strand, within GFF3774 at 670.534 kb on + strand, within GFF3774 at 670.535 kb on - strand, within GFF3774 at 671.329 kb on + strand, within GFF3774 at 671.531 kb on - strand, within GFF3774 at 671.770 kb on + strand at 671.771 kb on - strand at 671.849 kb on - strand at 672.073 kb on + strand, within GFF3775 at 672.271 kb on + strand, within GFF3775 at 672.271 kb on + strand, within GFF3775 at 672.272 kb on - strand, within GFF3775 at 672.272 kb on - strand, within GFF3775 at 672.460 kb on + strand, within GFF3775 at 672.460 kb on + strand, within GFF3775 at 672.460 kb on + strand, within GFF3775 at 672.461 kb on - strand, within GFF3775
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 669,436 - +0.3 669,437 + -0.3 669,437 + -0.5 669,437 + +0.4 669,437 + -2.3 669,438 - -0.3 669,460 + +0.3 669,460 + -0.1 669,502 - +0.1 669,542 + -0.2 669,543 - +0.3 669,644 + GFF3773 0.24 -0.8 669,645 - GFF3773 0.24 -1.6 669,920 + GFF3773 0.73 -0.5 669,921 - GFF3773 0.73 +0.1 669,941 + GFF3773 0.76 -0.4 669,942 - GFF3773 0.77 +0.5 670,090 + -0.4 670,090 + -0.4 670,090 + +1.0 670,090 + +0.1 670,091 - -0.5 670,091 - +0.3 670,477 + GFF3774 0.23 -0.2 670,478 - GFF3774 0.23 -0.3 670,478 - GFF3774 0.23 +0.0 670,534 + GFF3774 0.26 -0.2 670,535 - GFF3774 0.26 -0.2 671,329 + GFF3774 0.73 -0.1 671,531 - GFF3774 0.85 -0.1 671,770 + +0.0 671,771 - -0.3 671,849 - +0.9 672,073 + GFF3775 0.16 +0.1 672,271 + GFF3775 0.27 -0.3 672,271 + GFF3775 0.27 -0.4 672,272 - GFF3775 0.27 -0.5 672,272 - GFF3775 0.27 +0.3 672,460 + GFF3775 0.38 -1.5 672,460 + GFF3775 0.38 +0.9 672,460 + GFF3775 0.38 -0.1 672,461 - GFF3775 0.38 -0.3
Or see this region's nucleotide sequence