Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF373 and GFF374 are separated by 6 nucleotides GFF374 and GFF375 overlap by 18 nucleotides GFF375 and GFF376 overlap by 7 nucleotides GFF376 and GFF377 are separated by 155 nucleotides
GFF373 - TcuR: regulates tcuABC genes used in utilization of tricarballylate, at 36,897 to 37,802
GFF373
GFF374 - hypothetical protein, at 37,809 to 37,922
GFF374
GFF375 - probable iron-sulfur binding protein YPO1417, at 37,905 to 38,792
GFF375
GFF376 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157), at 38,786 to 39,637
GFF376
GFF377 - Choline dehydrogenase (EC 1.1.99.1), at 39,793 to 41,511
GFF377
Position (kb) 38
39
40 Strain fitness (log2 ratio) -2
-1
0
1 at 37.811 kb on - strand at 37.847 kb on + strand, within GFF374 at 38.325 kb on + strand, within GFF375 at 38.325 kb on + strand, within GFF375 at 38.325 kb on + strand, within GFF375 at 38.325 kb on + strand, within GFF375 at 38.325 kb on + strand, within GFF375 at 38.326 kb on - strand, within GFF375 at 38.326 kb on - strand, within GFF375 at 38.326 kb on - strand, within GFF375 at 38.568 kb on + strand, within GFF375 at 38.568 kb on + strand, within GFF375 at 38.568 kb on + strand, within GFF375 at 38.568 kb on + strand, within GFF375 at 38.569 kb on - strand, within GFF375 at 38.569 kb on - strand, within GFF375 at 38.569 kb on - strand, within GFF375 at 38.664 kb on + strand, within GFF375 at 38.664 kb on + strand, within GFF375 at 38.665 kb on - strand, within GFF375 at 38.665 kb on - strand, within GFF375 at 38.790 kb on + strand at 38.790 kb on + strand at 38.791 kb on + strand at 38.791 kb on - strand at 38.791 kb on - strand at 38.796 kb on + strand at 38.796 kb on + strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.868 kb on + strand at 38.895 kb on + strand, within GFF376 at 38.896 kb on - strand, within GFF376 at 39.405 kb on + strand, within GFF376 at 39.405 kb on + strand, within GFF376 at 39.406 kb on - strand, within GFF376 at 39.406 kb on - strand, within GFF376 at 39.406 kb on - strand, within GFF376 at 39.406 kb on - strand, within GFF376 at 39.698 kb on - strand at 39.734 kb on + strand at 39.735 kb on - strand at 39.803 kb on - strand at 39.803 kb on - strand at 39.803 kb on - strand at 40.016 kb on - strand, within GFF377 at 40.069 kb on + strand, within GFF377 at 40.093 kb on + strand, within GFF377 at 40.094 kb on - strand, within GFF377 at 40.150 kb on + strand, within GFF377 at 40.151 kb on - strand, within GFF377 at 40.285 kb on + strand, within GFF377 at 40.337 kb on - strand, within GFF377 at 40.337 kb on - strand, within GFF377 at 40.384 kb on + strand, within GFF377 at 40.384 kb on + strand, within GFF377 at 40.385 kb on - strand, within GFF377 at 40.385 kb on - strand, within GFF377 at 40.385 kb on - strand, within GFF377
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 37,811 - +0.1 37,847 + GFF374 0.33 -0.5 38,325 + GFF375 0.47 -0.2 38,325 + GFF375 0.47 +0.0 38,325 + GFF375 0.47 -0.2 38,325 + GFF375 0.47 -0.1 38,325 + GFF375 0.47 +0.2 38,326 - GFF375 0.47 -0.2 38,326 - GFF375 0.47 +0.1 38,326 - GFF375 0.47 -1.1 38,568 + GFF375 0.75 +0.0 38,568 + GFF375 0.75 -0.3 38,568 + GFF375 0.75 -0.1 38,568 + GFF375 0.75 +0.9 38,569 - GFF375 0.75 -0.1 38,569 - GFF375 0.75 -0.4 38,569 - GFF375 0.75 -0.5 38,664 + GFF375 0.85 +0.7 38,664 + GFF375 0.85 -0.5 38,665 - GFF375 0.86 -0.3 38,665 - GFF375 0.86 +0.8 38,790 + +0.2 38,790 + +0.3 38,791 + -0.1 38,791 - -0.8 38,791 - -0.1 38,796 + -0.1 38,796 + -0.4 38,827 - -0.2 38,827 - +0.5 38,868 + -1.5 38,895 + GFF376 0.13 -0.6 38,896 - GFF376 0.13 -2.0 39,405 + GFF376 0.73 -0.0 39,405 + GFF376 0.73 +0.1 39,406 - GFF376 0.73 +0.1 39,406 - GFF376 0.73 +0.1 39,406 - GFF376 0.73 -0.3 39,406 - GFF376 0.73 -1.0 39,698 - +0.5 39,734 + -0.1 39,735 - -0.2 39,803 - +1.5 39,803 - -0.5 39,803 - +0.4 40,016 - GFF377 0.13 +0.2 40,069 + GFF377 0.16 +0.4 40,093 + GFF377 0.17 +0.4 40,094 - GFF377 0.18 -0.6 40,150 + GFF377 0.21 -0.7 40,151 - GFF377 0.21 +0.8 40,285 + GFF377 0.29 -0.5 40,337 - GFF377 0.32 -0.2 40,337 - GFF377 0.32 -1.4 40,384 + GFF377 0.34 +0.2 40,384 + GFF377 0.34 -0.1 40,385 - GFF377 0.34 -0.3 40,385 - GFF377 0.34 -0.3 40,385 - GFF377 0.34 -0.3
Or see this region's nucleotide sequence