Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3755 and GFF3756 are separated by 43 nucleotides GFF3756 and GFF3757 are separated by 104 nucleotides
GFF3755 - Outer membrane component of tripartite multidrug resistance system, at 648,620 to 650,071
GFF3755
GFF3756 - Membrane fusion component of tripartite multidrug resistance system, at 650,115 to 651,410
GFF3756
GFF3757 - Inner membrane component of tripartite multidrug resistance system, at 651,515 to 653,044
GFF3757
Position (kb) 650
651
652 Strain fitness (log2 ratio) -1
0
1
2 at 649.187 kb on + strand, within GFF3755 at 649.187 kb on + strand, within GFF3755 at 649.187 kb on + strand, within GFF3755 at 649.187 kb on + strand, within GFF3755 at 649.187 kb on + strand, within GFF3755 at 649.187 kb on + strand, within GFF3755 at 649.188 kb on - strand, within GFF3755 at 649.188 kb on - strand, within GFF3755 at 649.188 kb on - strand, within GFF3755 at 649.188 kb on - strand, within GFF3755 at 649.188 kb on - strand, within GFF3755 at 649.583 kb on + strand, within GFF3755 at 649.584 kb on - strand, within GFF3755 at 649.584 kb on - strand, within GFF3755 at 649.664 kb on + strand, within GFF3755 at 649.766 kb on + strand, within GFF3755 at 649.766 kb on + strand, within GFF3755 at 649.767 kb on - strand, within GFF3755 at 649.925 kb on + strand, within GFF3755 at 650.085 kb on + strand at 650.085 kb on + strand at 650.085 kb on + strand at 650.086 kb on - strand at 650.086 kb on - strand at 650.269 kb on - strand, within GFF3756 at 650.457 kb on + strand, within GFF3756 at 650.458 kb on - strand, within GFF3756 at 650.772 kb on + strand, within GFF3756 at 650.772 kb on + strand, within GFF3756 at 650.772 kb on + strand, within GFF3756 at 650.773 kb on - strand, within GFF3756 at 650.773 kb on - strand, within GFF3756 at 650.773 kb on - strand, within GFF3756 at 650.817 kb on + strand, within GFF3756 at 650.817 kb on + strand, within GFF3756 at 650.980 kb on - strand, within GFF3756 at 650.997 kb on + strand, within GFF3756 at 650.997 kb on + strand, within GFF3756 at 650.997 kb on + strand, within GFF3756 at 651.900 kb on - strand, within GFF3757 at 652.022 kb on + strand, within GFF3757 at 652.022 kb on + strand, within GFF3757 at 652.023 kb on - strand, within GFF3757 at 652.074 kb on - strand, within GFF3757 at 652.349 kb on + strand, within GFF3757 at 652.350 kb on - strand, within GFF3757
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 649,187 + GFF3755 0.39 +0.1 649,187 + GFF3755 0.39 -0.6 649,187 + GFF3755 0.39 -0.8 649,187 + GFF3755 0.39 +0.0 649,187 + GFF3755 0.39 -0.4 649,187 + GFF3755 0.39 -0.1 649,188 - GFF3755 0.39 +0.2 649,188 - GFF3755 0.39 +0.3 649,188 - GFF3755 0.39 -0.3 649,188 - GFF3755 0.39 -0.6 649,188 - GFF3755 0.39 +0.1 649,583 + GFF3755 0.66 -0.1 649,584 - GFF3755 0.66 +0.5 649,584 - GFF3755 0.66 -0.7 649,664 + GFF3755 0.72 -0.3 649,766 + GFF3755 0.79 +0.0 649,766 + GFF3755 0.79 +1.0 649,767 - GFF3755 0.79 -0.6 649,925 + GFF3755 0.90 -0.1 650,085 + -0.5 650,085 + +0.1 650,085 + +0.1 650,086 - +1.9 650,086 - -0.3 650,269 - GFF3756 0.12 -0.1 650,457 + GFF3756 0.26 -0.3 650,458 - GFF3756 0.26 +0.5 650,772 + GFF3756 0.51 -0.8 650,772 + GFF3756 0.51 +0.1 650,772 + GFF3756 0.51 -0.1 650,773 - GFF3756 0.51 -0.3 650,773 - GFF3756 0.51 +0.0 650,773 - GFF3756 0.51 -0.1 650,817 + GFF3756 0.54 +0.0 650,817 + GFF3756 0.54 +0.5 650,980 - GFF3756 0.67 +0.3 650,997 + GFF3756 0.68 +0.7 650,997 + GFF3756 0.68 +0.2 650,997 + GFF3756 0.68 -0.3 651,900 - GFF3757 0.25 -0.3 652,022 + GFF3757 0.33 -0.1 652,022 + GFF3757 0.33 -0.5 652,023 - GFF3757 0.33 -0.3 652,074 - GFF3757 0.37 +0.3 652,349 + GFF3757 0.55 +0.5 652,350 - GFF3757 0.55 -0.7
Or see this region's nucleotide sequence