Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3509

Experiment: Ying_OrganicAcid7 rep B; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3508 and GFF3509 overlap by 22 nucleotidesGFF3509 and GFF3510 are separated by 76 nucleotides GFF3508 - SMART domain SM00020; serine protease-like, at 390,661 to 395,013 GFF3508 GFF3509 - DNA circulation protein, putative, at 394,992 to 396,449 GFF3509 GFF3510 - FIG01198748: hypothetical protein, at 396,526 to 398,232 GFF3510 Position (kb) 394 395 396 397Strain fitness (log2 ratio) -1 0 1at 394.005 kb on - strand, within GFF3508at 394.054 kb on - strand, within GFF3508at 394.054 kb on - strand, within GFF3508at 394.108 kb on + strand, within GFF3508at 394.108 kb on + strand, within GFF3508at 394.109 kb on - strand, within GFF3508at 394.142 kb on + strand, within GFF3508at 394.165 kb on + strand, within GFF3508at 394.166 kb on - strand, within GFF3508at 394.166 kb on - strand, within GFF3508at 394.198 kb on + strand, within GFF3508at 394.461 kb on + strand, within GFF3508at 394.461 kb on + strand, within GFF3508at 394.462 kb on - strand, within GFF3508at 394.474 kb on + strand, within GFF3508at 394.475 kb on - strand, within GFF3508at 394.475 kb on - strand, within GFF3508at 394.504 kb on + strand, within GFF3508at 394.504 kb on + strand, within GFF3508at 394.504 kb on + strand, within GFF3508at 394.742 kb on - strandat 394.782 kb on + strandat 394.943 kb on + strandat 394.943 kb on + strandat 394.944 kb on - strandat 395.127 kb on - strandat 395.209 kb on - strand, within GFF3509at 395.471 kb on + strand, within GFF3509at 395.487 kb on + strand, within GFF3509at 395.487 kb on + strand, within GFF3509at 395.487 kb on + strand, within GFF3509at 395.545 kb on - strand, within GFF3509at 395.647 kb on - strand, within GFF3509at 395.714 kb on + strand, within GFF3509at 395.715 kb on - strand, within GFF3509at 395.715 kb on - strand, within GFF3509at 395.715 kb on - strand, within GFF3509at 395.760 kb on + strand, within GFF3509at 395.760 kb on + strand, within GFF3509at 395.760 kb on + strand, within GFF3509at 395.760 kb on + strand, within GFF3509at 395.761 kb on - strand, within GFF3509at 395.761 kb on - strand, within GFF3509at 396.013 kb on + strand, within GFF3509at 396.074 kb on - strand, within GFF3509at 396.102 kb on + strand, within GFF3509at 396.102 kb on + strand, within GFF3509at 396.102 kb on + strand, within GFF3509at 396.103 kb on - strand, within GFF3509at 396.135 kb on + strand, within GFF3509at 396.136 kb on - strand, within GFF3509at 396.248 kb on + strand, within GFF3509at 396.249 kb on - strand, within GFF3509at 396.260 kb on + strand, within GFF3509at 396.260 kb on + strand, within GFF3509at 396.261 kb on - strand, within GFF3509at 396.319 kb on + strandat 396.320 kb on - strandat 396.330 kb on + strandat 396.331 kb on - strandat 396.399 kb on + strandat 396.399 kb on + strandat 396.400 kb on - strandat 396.400 kb on - strandat 396.426 kb on + strandat 396.426 kb on + strandat 396.426 kb on + strandat 396.426 kb on + strandat 396.426 kb on + strandat 396.426 kb on + strandat 396.427 kb on - strandat 396.427 kb on - strandat 396.427 kb on - strandat 396.427 kb on - strandat 396.427 kb on - strandat 396.455 kb on - strandat 396.474 kb on + strandat 396.528 kb on - strandat 396.740 kb on + strand, within GFF3510at 396.740 kb on + strand, within GFF3510at 396.740 kb on + strand, within GFF3510at 396.741 kb on - strand, within GFF3510at 396.765 kb on - strand, within GFF3510at 396.777 kb on + strand, within GFF3510at 396.887 kb on + strand, within GFF3510at 396.887 kb on + strand, within GFF3510at 396.887 kb on + strand, within GFF3510at 396.888 kb on - strand, within GFF3510at 397.001 kb on - strand, within GFF3510at 397.001 kb on - strand, within GFF3510at 397.001 kb on - strand, within GFF3510at 397.079 kb on + strand, within GFF3510at 397.079 kb on + strand, within GFF3510at 397.080 kb on - strand, within GFF3510at 397.149 kb on - strand, within GFF3510at 397.149 kb on - strand, within GFF3510at 397.171 kb on + strand, within GFF3510at 397.259 kb on + strand, within GFF3510at 397.260 kb on - strand, within GFF3510at 397.260 kb on - strand, within GFF3510

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1
remove
394,005 - GFF3508 0.77 -0.9
394,054 - GFF3508 0.78 +0.1
394,054 - GFF3508 0.78 +0.1
394,108 + GFF3508 0.79 -1.1
394,108 + GFF3508 0.79 -0.0
394,109 - GFF3508 0.79 +0.1
394,142 + GFF3508 0.80 +0.4
394,165 + GFF3508 0.80 +0.4
394,166 - GFF3508 0.81 -0.2
394,166 - GFF3508 0.81 +0.2
394,198 + GFF3508 0.81 -0.0
394,461 + GFF3508 0.87 -0.1
394,461 + GFF3508 0.87 +0.7
394,462 - GFF3508 0.87 +1.0
394,474 + GFF3508 0.88 +0.4
394,475 - GFF3508 0.88 -0.0
394,475 - GFF3508 0.88 -0.1
394,504 + GFF3508 0.88 -0.5
394,504 + GFF3508 0.88 +0.6
394,504 + GFF3508 0.88 +0.3
394,742 - +0.2
394,782 + +0.0
394,943 + -0.7
394,943 + -0.4
394,944 - -0.2
395,127 - -0.1
395,209 - GFF3509 0.15 -0.5
395,471 + GFF3509 0.33 -0.6
395,487 + GFF3509 0.34 -0.2
395,487 + GFF3509 0.34 -0.2
395,487 + GFF3509 0.34 +0.1
395,545 - GFF3509 0.38 +0.0
395,647 - GFF3509 0.45 -0.2
395,714 + GFF3509 0.50 +0.2
395,715 - GFF3509 0.50 -0.3
395,715 - GFF3509 0.50 +0.2
395,715 - GFF3509 0.50 -0.4
395,760 + GFF3509 0.53 -0.4
395,760 + GFF3509 0.53 +0.3
395,760 + GFF3509 0.53 +0.1
395,760 + GFF3509 0.53 -0.1
395,761 - GFF3509 0.53 +0.0
395,761 - GFF3509 0.53 -0.4
396,013 + GFF3509 0.70 +0.3
396,074 - GFF3509 0.74 +0.1
396,102 + GFF3509 0.76 +0.0
396,102 + GFF3509 0.76 -0.3
396,102 + GFF3509 0.76 +0.6
396,103 - GFF3509 0.76 -0.4
396,135 + GFF3509 0.78 +0.6
396,136 - GFF3509 0.78 -0.7
396,248 + GFF3509 0.86 -0.1
396,249 - GFF3509 0.86 +0.1
396,260 + GFF3509 0.87 +0.2
396,260 + GFF3509 0.87 +0.4
396,261 - GFF3509 0.87 -1.0
396,319 + +0.0
396,320 - +0.5
396,330 + -0.5
396,331 - -0.2
396,399 + -1.2
396,399 + +0.3
396,400 - -1.0
396,400 - +0.5
396,426 + -0.0
396,426 + +0.3
396,426 + +0.2
396,426 + -0.2
396,426 + +0.2
396,426 + +0.7
396,427 - -0.4
396,427 - +0.8
396,427 - -0.3
396,427 - +1.2
396,427 - -1.2
396,455 - -0.8
396,474 + +0.3
396,528 - -0.3
396,740 + GFF3510 0.13 +0.4
396,740 + GFF3510 0.13 -0.3
396,740 + GFF3510 0.13 -0.1
396,741 - GFF3510 0.13 +0.2
396,765 - GFF3510 0.14 +0.0
396,777 + GFF3510 0.15 -0.7
396,887 + GFF3510 0.21 -0.2
396,887 + GFF3510 0.21 -0.7
396,887 + GFF3510 0.21 -0.4
396,888 - GFF3510 0.21 -0.2
397,001 - GFF3510 0.28 -0.0
397,001 - GFF3510 0.28 +0.1
397,001 - GFF3510 0.28 -0.3
397,079 + GFF3510 0.32 -0.2
397,079 + GFF3510 0.32 -1.5
397,080 - GFF3510 0.32 +1.7
397,149 - GFF3510 0.36 +0.0
397,149 - GFF3510 0.36 +0.0
397,171 + GFF3510 0.38 -0.4
397,259 + GFF3510 0.43 +1.1
397,260 - GFF3510 0.43 +0.2
397,260 - GFF3510 0.43 +0.0

Or see this region's nucleotide sequence