Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3328 and GFF3329 are separated by 855 nucleotides GFF3329 and GFF3330 are separated by 122 nucleotides GFF3330 and GFF3331 are separated by 186 nucleotides
GFF3328 - Septum formation protein Maf, at 213,094 to 213,708
GFF3328
GFF3329 - Retron-type RNA-directed DNA polymerase (EC 2.7.7.49), at 214,564 to 216,435
GFF3329
GFF3330 - COG1399 protein, clustered with ribosomal protein L32p, at 216,558 to 217,130
GFF3330
GFF3331 - LSU ribosomal protein L32p, at 217,317 to 217,499
GFF3331
Position (kb) 214
215
216
217 Strain fitness (log2 ratio) -2
-1
0
1
2 at 213.715 kb on - strand at 213.733 kb on + strand at 213.733 kb on + strand at 213.733 kb on + strand at 213.734 kb on - strand at 213.734 kb on - strand at 213.734 kb on - strand at 213.734 kb on - strand at 213.769 kb on + strand at 213.769 kb on + strand at 213.769 kb on + strand at 213.769 kb on + strand at 213.769 kb on + strand at 213.770 kb on - strand at 213.770 kb on - strand at 213.777 kb on + strand at 213.777 kb on + strand at 213.777 kb on + strand at 213.777 kb on + strand at 213.789 kb on + strand at 213.790 kb on - strand at 213.790 kb on - strand at 213.790 kb on - strand at 213.790 kb on - strand at 213.798 kb on - strand at 213.811 kb on + strand at 213.812 kb on - strand at 213.944 kb on + strand at 213.996 kb on - strand at 214.029 kb on + strand at 214.029 kb on + strand at 214.029 kb on + strand at 214.029 kb on + strand at 214.029 kb on + strand at 214.029 kb on + strand at 214.029 kb on + strand at 214.029 kb on + strand at 214.029 kb on + strand at 214.029 kb on + strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.030 kb on - strand at 214.033 kb on + strand at 214.033 kb on + strand at 214.033 kb on + strand at 214.033 kb on + strand at 214.033 kb on + strand at 214.033 kb on + strand at 214.033 kb on + strand at 214.034 kb on - strand at 214.034 kb on - strand at 214.034 kb on - strand at 214.034 kb on - strand at 214.034 kb on - strand at 214.118 kb on + strand at 214.119 kb on - strand at 214.143 kb on + strand at 214.143 kb on + strand at 214.144 kb on - strand at 214.144 kb on - strand at 214.144 kb on - strand at 214.233 kb on + strand at 214.278 kb on + strand at 214.278 kb on + strand at 214.278 kb on + strand at 214.278 kb on + strand at 214.278 kb on + strand at 214.279 kb on - strand at 214.279 kb on - strand at 214.306 kb on + strand at 214.307 kb on - strand at 214.307 kb on - strand at 214.357 kb on + strand at 214.357 kb on + strand at 214.357 kb on + strand at 214.357 kb on + strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.358 kb on - strand at 214.394 kb on + strand at 214.395 kb on - strand at 214.456 kb on - strand at 214.522 kb on + strand at 214.523 kb on - strand at 214.523 kb on - strand at 214.523 kb on - strand at 214.523 kb on - strand at 214.562 kb on + strand at 214.562 kb on + strand at 214.562 kb on + strand at 214.563 kb on - strand at 214.574 kb on + strand at 214.574 kb on + strand at 214.728 kb on + strand at 214.728 kb on + strand at 214.728 kb on + strand at 214.728 kb on + strand at 214.728 kb on + strand at 214.729 kb on - strand at 214.729 kb on - strand at 214.729 kb on - strand at 214.729 kb on - strand at 214.729 kb on - strand at 214.729 kb on - strand at 214.735 kb on + strand at 214.735 kb on + strand at 214.736 kb on - strand at 214.736 kb on - strand at 214.736 kb on - strand at 214.736 kb on - strand at 214.736 kb on - strand at 214.813 kb on + strand, within GFF3329 at 214.813 kb on + strand, within GFF3329 at 214.813 kb on + strand, within GFF3329 at 214.813 kb on + strand, within GFF3329 at 214.813 kb on + strand, within GFF3329 at 214.814 kb on - strand, within GFF3329 at 214.820 kb on + strand, within GFF3329 at 214.821 kb on - strand, within GFF3329 at 214.992 kb on + strand, within GFF3329 at 215.004 kb on + strand, within GFF3329 at 215.020 kb on - strand, within GFF3329 at 215.020 kb on - strand, within GFF3329 at 215.058 kb on - strand, within GFF3329 at 215.073 kb on - strand, within GFF3329 at 215.155 kb on - strand, within GFF3329 at 215.155 kb on - strand, within GFF3329 at 215.155 kb on - strand, within GFF3329 at 215.194 kb on + strand, within GFF3329 at 215.194 kb on + strand, within GFF3329 at 215.194 kb on + strand, within GFF3329 at 215.296 kb on - strand, within GFF3329 at 215.616 kb on + strand, within GFF3329 at 215.616 kb on + strand, within GFF3329 at 215.617 kb on - strand, within GFF3329 at 215.617 kb on - strand, within GFF3329 at 215.731 kb on + strand, within GFF3329 at 215.732 kb on - strand, within GFF3329 at 215.732 kb on - strand, within GFF3329 at 215.782 kb on + strand, within GFF3329 at 215.782 kb on + strand, within GFF3329 at 215.782 kb on + strand, within GFF3329 at 215.782 kb on + strand, within GFF3329 at 215.782 kb on + strand, within GFF3329 at 215.782 kb on + strand, within GFF3329 at 215.783 kb on - strand, within GFF3329 at 215.783 kb on - strand, within GFF3329 at 215.835 kb on - strand, within GFF3329 at 215.849 kb on + strand, within GFF3329 at 215.850 kb on - strand, within GFF3329 at 215.850 kb on - strand, within GFF3329 at 215.878 kb on + strand, within GFF3329 at 215.879 kb on - strand, within GFF3329 at 215.879 kb on - strand, within GFF3329 at 216.001 kb on + strand, within GFF3329 at 216.001 kb on + strand, within GFF3329 at 216.002 kb on - strand, within GFF3329 at 216.002 kb on - strand, within GFF3329 at 216.082 kb on + strand, within GFF3329 at 216.082 kb on + strand, within GFF3329 at 216.082 kb on + strand, within GFF3329 at 216.083 kb on - strand, within GFF3329 at 216.083 kb on - strand, within GFF3329 at 216.133 kb on + strand, within GFF3329 at 216.133 kb on + strand, within GFF3329 at 216.133 kb on + strand, within GFF3329 at 216.133 kb on + strand, within GFF3329 at 216.134 kb on - strand, within GFF3329 at 216.134 kb on - strand, within GFF3329 at 216.134 kb on - strand, within GFF3329 at 216.134 kb on - strand, within GFF3329 at 216.134 kb on - strand, within GFF3329 at 216.163 kb on + strand, within GFF3329 at 216.164 kb on - strand, within GFF3329 at 216.164 kb on - strand, within GFF3329 at 216.164 kb on - strand, within GFF3329 at 216.176 kb on + strand, within GFF3329 at 216.176 kb on + strand, within GFF3329 at 216.176 kb on + strand, within GFF3329 at 216.176 kb on + strand, within GFF3329 at 216.177 kb on - strand, within GFF3329 at 216.177 kb on - strand, within GFF3329 at 216.177 kb on - strand, within GFF3329 at 216.177 kb on - strand, within GFF3329 at 216.177 kb on - strand, within GFF3329 at 216.196 kb on - strand, within GFF3329 at 216.317 kb on + strand at 216.359 kb on + strand at 216.359 kb on + strand at 216.359 kb on + strand at 216.359 kb on + strand at 216.359 kb on + strand at 216.359 kb on + strand at 216.359 kb on + strand at 216.359 kb on + strand at 216.360 kb on - strand at 216.360 kb on - strand at 216.360 kb on - strand at 216.381 kb on + strand at 216.393 kb on - strand at 216.393 kb on - strand at 216.433 kb on + strand at 216.434 kb on - strand at 216.434 kb on - strand at 216.434 kb on - strand at 216.443 kb on + strand at 216.443 kb on + strand at 216.443 kb on + strand at 216.444 kb on - strand at 216.444 kb on - strand at 216.444 kb on - strand at 216.444 kb on - strand at 216.458 kb on + strand at 216.458 kb on + strand at 216.458 kb on + strand at 216.458 kb on + strand at 216.458 kb on + strand at 216.458 kb on + strand at 216.458 kb on + strand at 216.458 kb on + strand at 216.458 kb on + strand at 216.458 kb on + strand at 216.458 kb on + strand at 216.458 kb on + strand at 216.458 kb on + strand at 216.459 kb on - strand at 216.459 kb on - strand at 216.459 kb on - strand at 216.459 kb on - strand at 216.459 kb on - strand at 216.459 kb on - strand at 216.459 kb on - strand at 216.504 kb on + strand at 216.504 kb on + strand at 216.505 kb on - strand at 216.505 kb on - strand at 216.505 kb on - strand at 216.524 kb on + strand at 216.524 kb on + strand at 216.524 kb on + strand at 216.524 kb on + strand at 216.524 kb on + strand at 216.524 kb on + strand at 216.524 kb on + strand at 216.524 kb on + strand at 216.525 kb on - strand at 216.525 kb on - strand at 216.525 kb on - strand at 216.525 kb on - strand at 216.525 kb on - strand at 216.525 kb on - strand at 216.533 kb on + strand at 216.534 kb on - strand at 216.543 kb on + strand at 216.544 kb on - strand at 216.545 kb on + strand at 216.545 kb on + strand at 216.545 kb on + strand at 216.545 kb on + strand at 216.545 kb on + strand at 216.545 kb on + strand at 216.545 kb on + strand at 216.545 kb on + strand at 216.545 kb on + strand at 216.545 kb on + strand at 216.545 kb on + strand at 216.546 kb on - strand at 216.546 kb on - strand at 216.546 kb on - strand at 216.546 kb on - strand at 216.546 kb on - strand at 216.546 kb on - strand at 216.546 kb on - strand at 216.546 kb on - strand at 216.548 kb on + strand at 216.548 kb on + strand at 216.549 kb on - strand at 216.549 kb on - strand at 216.554 kb on + strand at 216.554 kb on + strand at 216.554 kb on + strand at 216.554 kb on + strand at 216.554 kb on + strand at 216.554 kb on + strand at 216.554 kb on + strand at 216.554 kb on + strand at 216.554 kb on + strand at 216.554 kb on + strand at 216.554 kb on + strand at 216.554 kb on + strand at 216.554 kb on + strand at 216.554 kb on + strand at 216.554 kb on + strand at 216.555 kb on - strand at 216.555 kb on - strand at 216.555 kb on - strand at 216.555 kb on - strand at 216.555 kb on - strand at 216.555 kb on - strand at 216.555 kb on - strand at 216.557 kb on + strand at 216.557 kb on + strand at 216.557 kb on + strand at 216.557 kb on + strand at 216.557 kb on + strand at 216.557 kb on + strand at 216.557 kb on + strand at 216.557 kb on + strand at 216.558 kb on - strand at 216.558 kb on - strand at 216.558 kb on - strand at 216.558 kb on - strand at 216.558 kb on - strand at 217.181 kb on + strand at 217.181 kb on + strand at 217.182 kb on - strand at 217.182 kb on - strand at 217.182 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 213,715 - +1.8 213,733 + -0.8 213,733 + +0.9 213,733 + -0.1 213,734 - -0.2 213,734 - -1.3 213,734 - -0.3 213,734 - -0.2 213,769 + +0.9 213,769 + -0.0 213,769 + +0.2 213,769 + +0.0 213,769 + +0.7 213,770 - -0.4 213,770 - +1.2 213,777 + +0.1 213,777 + -0.4 213,777 + -0.3 213,777 + +2.2 213,789 + +0.0 213,790 - +0.0 213,790 - +0.7 213,790 - -0.0 213,790 - +0.9 213,798 - -0.5 213,811 + -0.2 213,812 - -0.5 213,944 + +0.2 213,996 - -1.7 214,029 + +0.3 214,029 + +0.6 214,029 + +1.6 214,029 + +0.2 214,029 + -0.1 214,029 + -0.3 214,029 + +1.1 214,029 + +0.0 214,029 + -1.8 214,029 + +0.1 214,030 - +0.7 214,030 - +0.1 214,030 - +0.1 214,030 - -0.3 214,030 - +0.1 214,030 - -0.3 214,030 - -0.1 214,030 - -0.5 214,030 - -1.2 214,030 - -0.3 214,030 - +0.3 214,030 - -0.3 214,030 - -0.6 214,030 - +0.6 214,033 + +0.0 214,033 + -0.1 214,033 + -0.4 214,033 + -0.2 214,033 + +0.7 214,033 + +0.4 214,033 + +0.8 214,034 - +0.0 214,034 - -0.3 214,034 - +0.3 214,034 - -1.8 214,034 - +0.1 214,118 + -0.0 214,119 - +0.2 214,143 + +0.5 214,143 + +0.5 214,144 - -0.8 214,144 - +0.5 214,144 - -0.2 214,233 + +0.0 214,278 + -0.5 214,278 + +0.2 214,278 + +1.3 214,278 + +0.0 214,278 + +0.3 214,279 - +0.0 214,279 - +0.9 214,306 + -0.0 214,307 - +0.4 214,307 - +0.2 214,357 + -0.3 214,357 + -0.3 214,357 + -0.4 214,357 + +0.0 214,358 - -0.5 214,358 - +0.1 214,358 - -0.4 214,358 - +0.2 214,358 - +0.6 214,358 - -1.1 214,358 - +0.7 214,358 - -0.4 214,358 - +0.8 214,358 - -0.1 214,358 - +0.1 214,394 + +0.0 214,395 - +0.2 214,456 - +0.9 214,522 + -0.0 214,523 - +1.3 214,523 - +0.1 214,523 - -0.1 214,523 - +0.3 214,562 + -1.6 214,562 + +0.6 214,562 + +0.3 214,563 - -0.5 214,574 + +0.1 214,574 + +0.4 214,728 + -0.5 214,728 + -0.5 214,728 + +0.2 214,728 + +0.7 214,728 + +2.2 214,729 - +0.3 214,729 - -0.4 214,729 - -0.4 214,729 - +1.4 214,729 - -0.1 214,729 - -0.0 214,735 + -0.1 214,735 + +0.3 214,736 - -0.5 214,736 - -0.1 214,736 - +0.2 214,736 - +0.1 214,736 - +0.5 214,813 + GFF3329 0.13 +0.4 214,813 + GFF3329 0.13 +0.8 214,813 + GFF3329 0.13 +0.3 214,813 + GFF3329 0.13 -0.4 214,813 + GFF3329 0.13 +0.5 214,814 - GFF3329 0.13 +0.5 214,820 + GFF3329 0.14 +0.2 214,821 - GFF3329 0.14 +0.2 214,992 + GFF3329 0.23 +0.2 215,004 + GFF3329 0.24 -0.3 215,020 - GFF3329 0.24 +1.0 215,020 - GFF3329 0.24 +0.4 215,058 - GFF3329 0.26 +1.2 215,073 - GFF3329 0.27 +0.2 215,155 - GFF3329 0.32 +0.0 215,155 - GFF3329 0.32 -1.1 215,155 - GFF3329 0.32 -0.6 215,194 + GFF3329 0.34 +0.8 215,194 + GFF3329 0.34 -0.6 215,194 + GFF3329 0.34 +0.6 215,296 - GFF3329 0.39 -0.1 215,616 + GFF3329 0.56 -0.5 215,616 + GFF3329 0.56 +0.1 215,617 - GFF3329 0.56 -0.7 215,617 - GFF3329 0.56 +0.1 215,731 + GFF3329 0.62 -0.4 215,732 - GFF3329 0.62 -0.1 215,732 - GFF3329 0.62 +0.4 215,782 + GFF3329 0.65 -0.1 215,782 + GFF3329 0.65 -0.0 215,782 + GFF3329 0.65 +0.3 215,782 + GFF3329 0.65 +0.5 215,782 + GFF3329 0.65 -0.2 215,782 + GFF3329 0.65 +0.1 215,783 - GFF3329 0.65 -0.1 215,783 - GFF3329 0.65 +0.1 215,835 - GFF3329 0.68 +0.4 215,849 + GFF3329 0.69 -0.1 215,850 - GFF3329 0.69 -0.3 215,850 - GFF3329 0.69 +1.6 215,878 + GFF3329 0.70 -1.3 215,879 - GFF3329 0.70 +0.5 215,879 - GFF3329 0.70 +0.3 216,001 + GFF3329 0.77 +0.3 216,001 + GFF3329 0.77 -0.2 216,002 - GFF3329 0.77 +0.7 216,002 - GFF3329 0.77 +0.1 216,082 + GFF3329 0.81 +0.4 216,082 + GFF3329 0.81 -1.2 216,082 + GFF3329 0.81 -0.3 216,083 - GFF3329 0.81 +0.5 216,083 - GFF3329 0.81 -0.1 216,133 + GFF3329 0.84 +0.2 216,133 + GFF3329 0.84 -0.0 216,133 + GFF3329 0.84 +1.3 216,133 + GFF3329 0.84 +0.6 216,134 - GFF3329 0.84 -0.5 216,134 - GFF3329 0.84 -0.1 216,134 - GFF3329 0.84 +1.2 216,134 - GFF3329 0.84 -0.1 216,134 - GFF3329 0.84 -0.1 216,163 + GFF3329 0.85 +0.5 216,164 - GFF3329 0.85 +0.0 216,164 - GFF3329 0.85 +1.3 216,164 - GFF3329 0.85 +0.5 216,176 + GFF3329 0.86 -1.1 216,176 + GFF3329 0.86 +0.2 216,176 + GFF3329 0.86 +0.4 216,176 + GFF3329 0.86 +0.4 216,177 - GFF3329 0.86 +0.4 216,177 - GFF3329 0.86 -0.2 216,177 - GFF3329 0.86 -0.5 216,177 - GFF3329 0.86 -1.3 216,177 - GFF3329 0.86 -0.7 216,196 - GFF3329 0.87 -1.2 216,317 + +0.7 216,359 + +0.5 216,359 + +0.8 216,359 + +0.3 216,359 + -0.7 216,359 + -0.5 216,359 + -0.2 216,359 + -0.7 216,359 + -0.1 216,360 - -1.8 216,360 - -0.6 216,360 - -0.5 216,381 + -0.2 216,393 - -0.8 216,393 - -0.1 216,433 + -0.4 216,434 - -0.1 216,434 - +0.6 216,434 - +0.5 216,443 + +0.2 216,443 + -0.3 216,443 + +0.5 216,444 - +1.1 216,444 - +0.2 216,444 - -0.9 216,444 - +0.3 216,458 + -0.1 216,458 + -0.5 216,458 + +0.1 216,458 + -0.8 216,458 + -0.3 216,458 + -0.1 216,458 + -0.3 216,458 + -0.3 216,458 + -0.1 216,458 + -0.1 216,458 + +0.2 216,458 + -0.3 216,458 + +0.0 216,459 - -0.1 216,459 - +0.2 216,459 - +0.3 216,459 - +0.4 216,459 - +0.2 216,459 - -0.1 216,459 - -0.1 216,504 + +0.9 216,504 + +1.1 216,505 - +0.1 216,505 - +0.0 216,505 - +0.2 216,524 + -0.2 216,524 + +0.8 216,524 + +1.2 216,524 + -0.1 216,524 + +0.9 216,524 + +0.9 216,524 + -0.3 216,524 + +0.2 216,525 - -0.3 216,525 - +0.0 216,525 - +0.0 216,525 - -0.2 216,525 - -1.0 216,525 - -0.3 216,533 + +0.2 216,534 - +0.3 216,543 + -0.5 216,544 - -0.2 216,545 + -0.6 216,545 + +0.7 216,545 + -0.6 216,545 + +0.1 216,545 + -0.5 216,545 + -1.7 216,545 + +1.1 216,545 + +0.1 216,545 + +0.3 216,545 + -0.4 216,545 + +0.2 216,546 - +0.2 216,546 - -0.3 216,546 - -0.2 216,546 - +0.5 216,546 - -1.0 216,546 - +0.3 216,546 - -1.2 216,546 - +0.6 216,548 + +0.6 216,548 + +1.1 216,549 - +0.1 216,549 - -0.3 216,554 + -1.0 216,554 + -0.1 216,554 + +0.5 216,554 + +0.0 216,554 + -1.6 216,554 + -1.0 216,554 + +0.4 216,554 + +0.1 216,554 + -0.4 216,554 + +0.0 216,554 + -0.3 216,554 + +0.6 216,554 + -0.3 216,554 + +0.7 216,554 + -0.3 216,555 - +0.1 216,555 - +0.3 216,555 - +0.3 216,555 - -0.7 216,555 - +0.1 216,555 - +0.2 216,555 - -0.8 216,557 + -0.3 216,557 + +0.3 216,557 + +0.8 216,557 + -0.3 216,557 + +0.2 216,557 + -0.1 216,557 + +0.6 216,557 + +0.6 216,558 - -0.9 216,558 - -1.3 216,558 - -1.0 216,558 - -0.5 216,558 - -0.5 217,181 + -0.7 217,181 + -0.6 217,182 - -2.1 217,182 - -0.4 217,182 - -0.1
Or see this region's nucleotide sequence