Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3322 and GFF3323 are separated by 19 nucleotides GFF3323 and GFF3324 are separated by 4 nucleotides
GFF3322 - Periplasmic serine proteases (ClpP class), at 207,784 to 208,764
GFF3322
GFF3323 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 208,784 to 209,815
GFF3323
GFF3324 - Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22), at 209,820 to 211,205
GFF3324
Position (kb) 208
209
210 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 207.974 kb on - strand, within GFF3322 at 208.069 kb on + strand, within GFF3322 at 208.070 kb on - strand, within GFF3322 at 208.070 kb on - strand, within GFF3322 at 208.219 kb on + strand, within GFF3322 at 208.219 kb on + strand, within GFF3322 at 208.220 kb on - strand, within GFF3322 at 208.255 kb on + strand, within GFF3322 at 208.258 kb on + strand, within GFF3322 at 208.259 kb on - strand, within GFF3322 at 208.259 kb on - strand, within GFF3322 at 208.259 kb on - strand, within GFF3322 at 208.259 kb on - strand, within GFF3322 at 208.259 kb on - strand, within GFF3322 at 208.285 kb on + strand, within GFF3322 at 208.285 kb on + strand, within GFF3322 at 208.285 kb on + strand, within GFF3322 at 208.285 kb on + strand, within GFF3322 at 208.285 kb on + strand, within GFF3322 at 208.285 kb on + strand, within GFF3322 at 208.285 kb on + strand, within GFF3322 at 208.285 kb on + strand, within GFF3322 at 208.285 kb on + strand, within GFF3322 at 208.285 kb on + strand, within GFF3322 at 208.285 kb on + strand, within GFF3322 at 208.285 kb on + strand, within GFF3322 at 208.285 kb on + strand, within GFF3322 at 208.285 kb on + strand, within GFF3322 at 208.285 kb on + strand, within GFF3322 at 208.286 kb on - strand, within GFF3322 at 208.286 kb on - strand, within GFF3322 at 208.286 kb on - strand, within GFF3322 at 208.286 kb on - strand, within GFF3322 at 208.286 kb on - strand, within GFF3322 at 208.450 kb on + strand, within GFF3322 at 208.451 kb on - strand, within GFF3322 at 208.451 kb on - strand, within GFF3322 at 208.451 kb on - strand, within GFF3322 at 208.451 kb on - strand, within GFF3322 at 208.616 kb on - strand, within GFF3322 at 208.616 kb on - strand, within GFF3322 at 208.616 kb on - strand, within GFF3322 at 208.658 kb on - strand, within GFF3322 at 208.944 kb on + strand, within GFF3323 at 208.944 kb on + strand, within GFF3323 at 208.944 kb on + strand, within GFF3323 at 208.945 kb on - strand, within GFF3323 at 208.945 kb on - strand, within GFF3323 at 209.103 kb on + strand, within GFF3323 at 209.104 kb on - strand, within GFF3323 at 209.104 kb on - strand, within GFF3323 at 209.136 kb on + strand, within GFF3323 at 209.137 kb on - strand, within GFF3323 at 209.148 kb on + strand, within GFF3323 at 209.149 kb on - strand, within GFF3323 at 209.193 kb on + strand, within GFF3323 at 209.193 kb on + strand, within GFF3323 at 209.194 kb on - strand, within GFF3323 at 209.194 kb on - strand, within GFF3323 at 209.194 kb on - strand, within GFF3323 at 209.272 kb on - strand, within GFF3323 at 209.355 kb on + strand, within GFF3323 at 209.356 kb on - strand, within GFF3323 at 209.416 kb on - strand, within GFF3323 at 209.529 kb on + strand, within GFF3323 at 209.529 kb on + strand, within GFF3323 at 209.530 kb on - strand, within GFF3323 at 209.530 kb on - strand, within GFF3323 at 209.530 kb on - strand, within GFF3323 at 209.530 kb on - strand, within GFF3323 at 209.784 kb on + strand at 209.784 kb on + strand at 209.785 kb on - strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.854 kb on + strand at 209.855 kb on - strand at 209.855 kb on - strand at 209.855 kb on - strand at 209.855 kb on - strand at 209.855 kb on - strand at 209.855 kb on - strand at 209.855 kb on - strand at 209.893 kb on + strand at 209.893 kb on + strand at 209.893 kb on + strand at 209.894 kb on - strand at 209.974 kb on + strand, within GFF3324 at 209.974 kb on + strand, within GFF3324 at 209.974 kb on + strand, within GFF3324 at 209.974 kb on + strand, within GFF3324 at 209.974 kb on + strand, within GFF3324 at 209.974 kb on + strand, within GFF3324 at 209.975 kb on - strand, within GFF3324 at 209.975 kb on - strand, within GFF3324 at 209.975 kb on - strand, within GFF3324 at 209.975 kb on - strand, within GFF3324 at 209.975 kb on - strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.002 kb on - strand, within GFF3324 at 210.002 kb on - strand, within GFF3324 at 210.002 kb on - strand, within GFF3324 at 210.002 kb on - strand, within GFF3324 at 210.002 kb on - strand, within GFF3324 at 210.151 kb on + strand, within GFF3324 at 210.151 kb on + strand, within GFF3324 at 210.152 kb on - strand, within GFF3324 at 210.152 kb on - strand, within GFF3324 at 210.502 kb on + strand, within GFF3324 at 210.502 kb on + strand, within GFF3324 at 210.799 kb on + strand, within GFF3324 at 210.799 kb on + strand, within GFF3324 at 210.799 kb on + strand, within GFF3324 at 210.799 kb on + strand, within GFF3324 at 210.800 kb on - strand, within GFF3324 at 210.800 kb on - strand, within GFF3324 at 210.805 kb on + strand, within GFF3324 at 210.806 kb on - strand, within GFF3324
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 207,974 - GFF3322 0.19 +1.0 208,069 + GFF3322 0.29 -0.1 208,070 - GFF3322 0.29 +0.3 208,070 - GFF3322 0.29 -0.1 208,219 + GFF3322 0.44 -0.5 208,219 + GFF3322 0.44 -0.3 208,220 - GFF3322 0.44 -0.4 208,255 + GFF3322 0.48 -0.0 208,258 + GFF3322 0.48 -2.4 208,259 - GFF3322 0.48 +0.4 208,259 - GFF3322 0.48 +0.4 208,259 - GFF3322 0.48 +0.8 208,259 - GFF3322 0.48 -0.8 208,259 - GFF3322 0.48 -0.4 208,285 + GFF3322 0.51 +1.8 208,285 + GFF3322 0.51 +0.1 208,285 + GFF3322 0.51 -0.1 208,285 + GFF3322 0.51 -0.0 208,285 + GFF3322 0.51 -0.3 208,285 + GFF3322 0.51 +0.0 208,285 + GFF3322 0.51 +0.2 208,285 + GFF3322 0.51 +0.8 208,285 + GFF3322 0.51 +0.1 208,285 + GFF3322 0.51 +1.0 208,285 + GFF3322 0.51 +0.1 208,285 + GFF3322 0.51 +1.0 208,285 + GFF3322 0.51 -0.1 208,285 + GFF3322 0.51 -0.2 208,285 + GFF3322 0.51 +0.8 208,286 - GFF3322 0.51 +1.5 208,286 - GFF3322 0.51 -0.6 208,286 - GFF3322 0.51 +0.2 208,286 - GFF3322 0.51 -0.9 208,286 - GFF3322 0.51 +0.3 208,450 + GFF3322 0.68 +0.6 208,451 - GFF3322 0.68 -0.2 208,451 - GFF3322 0.68 +0.8 208,451 - GFF3322 0.68 -0.5 208,451 - GFF3322 0.68 -0.3 208,616 - GFF3322 0.85 +0.4 208,616 - GFF3322 0.85 +0.2 208,616 - GFF3322 0.85 +0.0 208,658 - GFF3322 0.89 -0.1 208,944 + GFF3323 0.16 +1.0 208,944 + GFF3323 0.16 +0.3 208,944 + GFF3323 0.16 +2.0 208,945 - GFF3323 0.16 +0.2 208,945 - GFF3323 0.16 +0.8 209,103 + GFF3323 0.31 +0.0 209,104 - GFF3323 0.31 -0.6 209,104 - GFF3323 0.31 -0.3 209,136 + GFF3323 0.34 +0.4 209,137 - GFF3323 0.34 -0.3 209,148 + GFF3323 0.35 +0.6 209,149 - GFF3323 0.35 +0.6 209,193 + GFF3323 0.40 +0.0 209,193 + GFF3323 0.40 +1.3 209,194 - GFF3323 0.40 -0.7 209,194 - GFF3323 0.40 -0.7 209,194 - GFF3323 0.40 +0.4 209,272 - GFF3323 0.47 +0.2 209,355 + GFF3323 0.55 +0.6 209,356 - GFF3323 0.55 -0.3 209,416 - GFF3323 0.61 +1.7 209,529 + GFF3323 0.72 +0.3 209,529 + GFF3323 0.72 +0.2 209,530 - GFF3323 0.72 +0.4 209,530 - GFF3323 0.72 +1.5 209,530 - GFF3323 0.72 +0.6 209,530 - GFF3323 0.72 +0.1 209,784 + +0.4 209,784 + -0.5 209,785 - +0.6 209,821 + -1.3 209,821 + +0.5 209,821 + -0.2 209,854 + -0.6 209,855 - -0.7 209,855 - -0.6 209,855 - +0.0 209,855 - -0.7 209,855 - -0.5 209,855 - -0.9 209,855 - -1.3 209,893 + -2.7 209,893 + -1.4 209,893 + -5.7 209,894 - -5.2 209,974 + GFF3324 0.11 -4.0 209,974 + GFF3324 0.11 -5.0 209,974 + GFF3324 0.11 -1.3 209,974 + GFF3324 0.11 -5.1 209,974 + GFF3324 0.11 -4.8 209,974 + GFF3324 0.11 -2.4 209,975 - GFF3324 0.11 -4.3 209,975 - GFF3324 0.11 -6.0 209,975 - GFF3324 0.11 -2.1 209,975 - GFF3324 0.11 -4.5 209,975 - GFF3324 0.11 -3.4 210,001 + GFF3324 0.13 -5.5 210,001 + GFF3324 0.13 -3.8 210,001 + GFF3324 0.13 -1.6 210,001 + GFF3324 0.13 -2.5 210,001 + GFF3324 0.13 -3.5 210,001 + GFF3324 0.13 -4.2 210,001 + GFF3324 0.13 -5.2 210,002 - GFF3324 0.13 -4.9 210,002 - GFF3324 0.13 -2.8 210,002 - GFF3324 0.13 -1.8 210,002 - GFF3324 0.13 -4.6 210,002 - GFF3324 0.13 -1.3 210,151 + GFF3324 0.24 -2.0 210,151 + GFF3324 0.24 -2.0 210,152 - GFF3324 0.24 -3.2 210,152 - GFF3324 0.24 -4.5 210,502 + GFF3324 0.49 -3.9 210,502 + GFF3324 0.49 -2.1 210,799 + GFF3324 0.71 -1.8 210,799 + GFF3324 0.71 -2.1 210,799 + GFF3324 0.71 -5.5 210,799 + GFF3324 0.71 -3.4 210,800 - GFF3324 0.71 -1.5 210,800 - GFF3324 0.71 -4.9 210,805 + GFF3324 0.71 -6.0 210,806 - GFF3324 0.71 -5.7
Or see this region's nucleotide sequence