Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3308 and GFF3309 are separated by 10 nucleotides GFF3309 and GFF3310 are separated by 95 nucleotides GFF3310 and GFF3311 overlap by 31 nucleotides
GFF3308 - N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87), at 194,548 to 196,341
GFF3308
GFF3309 - Uricase (urate oxidase) (EC 1.7.3.3), at 196,352 to 197,206
GFF3309
GFF3310 - Transcriptional regulator, GntR family, at 197,302 to 198,027
GFF3310
GFF3311 - 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17), at 197,997 to 198,395
GFF3311
Position (kb) 196
197
198 Strain fitness (log2 ratio) -1
0
1 at 195.417 kb on - strand, within GFF3308 at 195.466 kb on + strand, within GFF3308 at 195.564 kb on - strand, within GFF3308 at 195.720 kb on - strand, within GFF3308 at 196.581 kb on + strand, within GFF3309 at 196.608 kb on + strand, within GFF3309 at 196.609 kb on - strand, within GFF3309 at 196.728 kb on + strand, within GFF3309 at 196.729 kb on - strand, within GFF3309 at 196.731 kb on + strand, within GFF3309 at 196.732 kb on - strand, within GFF3309 at 196.803 kb on + strand, within GFF3309 at 196.803 kb on + strand, within GFF3309 at 196.803 kb on + strand, within GFF3309 at 197.065 kb on - strand, within GFF3309 at 197.070 kb on + strand, within GFF3309 at 197.071 kb on - strand, within GFF3309 at 197.295 kb on + strand at 197.296 kb on - strand at 197.483 kb on + strand, within GFF3310 at 197.484 kb on - strand, within GFF3310
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 195,417 - GFF3308 0.48 +0.2 195,466 + GFF3308 0.51 -0.3 195,564 - GFF3308 0.57 -0.1 195,720 - GFF3308 0.65 -0.4 196,581 + GFF3309 0.27 -0.1 196,608 + GFF3309 0.30 +1.1 196,609 - GFF3309 0.30 -0.1 196,728 + GFF3309 0.44 +0.7 196,729 - GFF3309 0.44 -1.0 196,731 + GFF3309 0.44 -0.2 196,732 - GFF3309 0.44 +0.0 196,803 + GFF3309 0.53 -0.2 196,803 + GFF3309 0.53 -0.2 196,803 + GFF3309 0.53 +0.5 197,065 - GFF3309 0.83 -0.3 197,070 + GFF3309 0.84 -0.3 197,071 - GFF3309 0.84 -1.7 197,295 + +0.6 197,296 - -0.5 197,483 + GFF3310 0.25 -0.3 197,484 - GFF3310 0.25 -0.0
Or see this region's nucleotide sequence