Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3199

Experiment: Ying_OrganicAcid7 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3197 and GFF3198 are separated by 290 nucleotidesGFF3198 and GFF3199 overlap by 11 nucleotidesGFF3199 and GFF3200 overlap by 4 nucleotidesGFF3200 and GFF3201 are separated by 202 nucleotides GFF3197 - hypothetical protein, at 85,355 to 85,909 GFF3197 GFF3198 - hypothetical protein, at 86,200 to 86,739 GFF3198 GFF3199 - hypothetical protein, at 86,729 to 87,487 GFF3199 GFF3200 - hypothetical protein, at 87,484 to 87,939 GFF3200 GFF3201 - hypothetical protein, at 88,142 to 88,810 GFF3201 Position (kb) 86 87 88Strain fitness (log2 ratio) -1 0 1at 86.091 kb on - strandat 86.091 kb on - strandat 86.318 kb on + strand, within GFF3198at 86.349 kb on - strand, within GFF3198at 86.705 kb on + strandat 86.705 kb on + strandat 86.705 kb on + strandat 86.706 kb on - strandat 87.057 kb on + strand, within GFF3199at 87.165 kb on + strand, within GFF3199at 87.597 kb on - strand, within GFF3200

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1
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86,091 - +0.3
86,091 - -0.8
86,318 + GFF3198 0.22 -0.3
86,349 - GFF3198 0.28 +0.2
86,705 + -0.2
86,705 + -1.5
86,705 + +0.6
86,706 - -0.3
87,057 + GFF3199 0.43 -0.8
87,165 + GFF3199 0.57 -0.6
87,597 - GFF3200 0.25 +0.2

Or see this region's nucleotide sequence