Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2725

Experiment: Ying_OrganicAcid7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 1
315,104	+		GFF2724	0.47	-0.4
315,104	+		GFF2724	0.47	-0.7
315,105	-		GFF2724	0.47	+0.2
315,112	+		GFF2724	0.47	-0.1
315,113	-		GFF2724	0.47	+0.3
315,113	-		GFF2724	0.47	+0.4
315,113	-		GFF2724	0.47	-0.5
315,113	-		GFF2724	0.47	-0.9
315,113	-		GFF2724	0.47	-0.4
315,179	-		GFF2724	0.52	-0.5
315,179	-		GFF2724	0.52	+0.7
315,179	-		GFF2724	0.52	-0.7
315,179	-		GFF2724	0.52	+0.3
315,373	+		GFF2724	0.64	-0.1
315,373	+		GFF2724	0.64	-0.5
315,374	-		GFF2724	0.64	+0.1
315,374	-		GFF2724	0.64	-0.1
315,411	-		GFF2724	0.66	-0.4
315,411	-		GFF2724	0.66	-0.0
315,412	+		GFF2724	0.66	+1.2
315,412	+		GFF2724	0.66	+0.2
315,413	-		GFF2724	0.66	+1.1
315,451	+		GFF2724	0.69	+0.1
315,451	+		GFF2724	0.69	+0.1
315,452	-		GFF2724	0.69	+0.1
315,452	-		GFF2724	0.69	-0.3
315,524	-		GFF2724	0.73	+1.1
315,547	+		GFF2724	0.75	+0.2
315,548	-		GFF2724	0.75	+0.0
315,548	-		GFF2724	0.75	+0.1
315,565	+		GFF2724	0.76	+0.2
315,566	-		GFF2724	0.76	+0.0
315,566	-		GFF2724	0.76	-0.1
315,566	-		GFF2724	0.76	+0.0
315,566	-		GFF2724	0.76	+0.1
315,585	+		GFF2724	0.77	-0.3
315,586	-		GFF2724	0.77	-0.2
315,592	+		GFF2724	0.78	+0.3
315,592	+		GFF2724	0.78	+0.2
315,592	+		GFF2724	0.78	+1.3
315,592	+		GFF2724	0.78	+0.3
315,592	+		GFF2724	0.78	+1.5
315,592	+		GFF2724	0.78	+0.0
315,592	+		GFF2724	0.78	-0.0
315,593	-		GFF2724	0.78	+0.0
315,593	-		GFF2724	0.78	+0.1
315,593	-		GFF2724	0.78	-0.1
315,593	-		GFF2724	0.78	-0.0
315,593	-		GFF2724	0.78	+0.2
315,593	-		GFF2724	0.78	+0.3
315,593	-		GFF2724	0.78	-0.1
315,593	-		GFF2724	0.78	-0.1
315,593	-		GFF2724	0.78	+0.9
315,685	+		GFF2724	0.84	+0.2
315,685	+		GFF2724	0.84	+1.2
315,686	-		GFF2724	0.84	-0.1
315,686	-		GFF2724	0.84	-0.3
315,686	-		GFF2724	0.84	-0.0
315,686	-		GFF2724	0.84	+0.9
315,686	-		GFF2724	0.84	-0.1
315,727	+		GFF2724	0.86	+0.6
315,748	+		GFF2724	0.88	-0.2
315,749	-		GFF2724	0.88	+0.5
315,795	+				-1.1
315,795	+				-0.1
315,795	+				+0.5
315,795	+				-0.1
315,795	+				+0.1
315,795	+				-0.1
315,795	+				+0.8
315,795	+				+0.1
315,795	+				-0.3
315,795	+				-0.8
315,795	+				-0.1
315,795	+				+0.1
315,795	+				+0.1
315,796	-				-0.3
315,796	-				+1.3
315,796	-				-0.4
315,796	-				+0.5
315,796	-				+0.0
315,796	-				+0.1
315,838	+				-0.0
315,839	-				-0.2
315,847	+				+0.1
315,847	+				+0.2
315,848	-				+1.2
315,871	+				+0.2
315,872	-				-0.0
315,901	+				-0.3
315,901	+				+0.1
315,901	+				+0.6
315,901	+				+0.2
315,902	-				-0.4
315,902	-				+1.1
315,902	-				-0.0
315,902	-				+1.7
315,993	+				-0.4
315,993	+				+0.6
315,993	+				-0.5
315,993	+				-1.0
315,994	-		GFF2725	0.10	-0.4
315,994	-		GFF2725	0.10	-0.8
315,994	-		GFF2725	0.10	+0.5
315,994	-		GFF2725	0.10	+0.6
316,089	+		GFF2725	0.31	-1.2
316,089	+		GFF2725	0.31	-0.7
316,090	-		GFF2725	0.31	-0.7
316,090	-		GFF2725	0.31	-0.1
316,251	+		GFF2725	0.65	-1.0
316,251	+		GFF2725	0.65	-1.1
316,252	-		GFF2725	0.66	-1.1
316,263	+		GFF2725	0.68	-0.6
316,263	+		GFF2725	0.68	-0.2
316,264	-		GFF2725	0.68	+0.4
316,264	-		GFF2725	0.68	-0.0
316,264	-		GFF2725	0.68	-0.3
316,703	-				-0.6
316,703	-				+0.0
316,853	+		GFF2726	0.12	-1.6
317,117	-		GFF2726	0.21	-0.5
317,201	-		GFF2726	0.24	-1.3
317,230	+		GFF2726	0.25	-1.3
317,230	+		GFF2726	0.25	-0.6