Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2518 and GFF2519 overlap by 39 nucleotides GFF2519 and GFF2520 are separated by 39 nucleotides GFF2520 and GFF2521 are separated by 13 nucleotides GFF2521 and GFF2522 are separated by 7 nucleotides
GFF2518 - Adenylosuccinate lyase (EC 4.3.2.2), at 101,976 to 103,403
GFF2518
GFF2519 - hypothetical protein, at 103,365 to 103,490
GFF2519
GFF2520 - Glutathione S-transferase family protein, at 103,530 to 104,144
GFF2520
GFF2521 - FIG002994: Putative transcriptional regulator, at 104,158 to 104,598
GFF2521
GFF2522 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 104,606 to 105,457
GFF2522
Position (kb) 103
104
105 Strain fitness (log2 ratio) -1
0
1 at 103.414 kb on + strand, within GFF2519 at 103.414 kb on + strand, within GFF2519 at 103.414 kb on + strand, within GFF2519 at 103.415 kb on - strand, within GFF2519 at 103.415 kb on - strand, within GFF2519 at 103.489 kb on - strand at 103.502 kb on + strand at 103.502 kb on + strand at 103.502 kb on + strand at 103.502 kb on + strand at 103.502 kb on + strand at 103.502 kb on + strand at 103.503 kb on - strand at 103.503 kb on - strand at 103.503 kb on - strand at 103.503 kb on - strand at 103.560 kb on + strand at 103.561 kb on - strand at 103.561 kb on - strand at 103.561 kb on - strand at 103.605 kb on + strand, within GFF2520 at 103.605 kb on + strand, within GFF2520 at 103.606 kb on - strand, within GFF2520 at 103.735 kb on - strand, within GFF2520 at 103.735 kb on - strand, within GFF2520 at 104.073 kb on + strand, within GFF2520 at 104.129 kb on + strand at 104.130 kb on - strand at 104.219 kb on + strand, within GFF2521 at 104.219 kb on + strand, within GFF2521 at 104.219 kb on + strand, within GFF2521 at 104.219 kb on + strand, within GFF2521 at 104.219 kb on + strand, within GFF2521 at 104.219 kb on + strand, within GFF2521 at 104.219 kb on + strand, within GFF2521 at 104.219 kb on + strand, within GFF2521 at 104.219 kb on + strand, within GFF2521 at 104.220 kb on + strand, within GFF2521 at 104.220 kb on - strand, within GFF2521 at 104.220 kb on - strand, within GFF2521 at 104.244 kb on - strand, within GFF2521 at 104.507 kb on + strand, within GFF2521 at 104.507 kb on + strand, within GFF2521 at 104.508 kb on - strand, within GFF2521 at 104.600 kb on + strand at 104.600 kb on + strand at 104.600 kb on + strand at 104.600 kb on + strand at 104.600 kb on + strand at 104.600 kb on + strand at 104.601 kb on - strand at 104.601 kb on - strand at 104.601 kb on - strand at 104.601 kb on - strand at 104.601 kb on - strand at 104.603 kb on - strand at 104.607 kb on + strand at 104.609 kb on + strand at 104.609 kb on + strand at 104.610 kb on - strand at 104.610 kb on - strand at 104.610 kb on - strand at 104.640 kb on + strand at 104.650 kb on - strand at 104.865 kb on + strand, within GFF2522 at 104.865 kb on + strand, within GFF2522 at 104.865 kb on + strand, within GFF2522 at 104.866 kb on - strand, within GFF2522 at 104.866 kb on - strand, within GFF2522 at 104.866 kb on - strand, within GFF2522 at 104.866 kb on - strand, within GFF2522 at 104.910 kb on + strand, within GFF2522 at 104.910 kb on + strand, within GFF2522 at 105.030 kb on + strand, within GFF2522 at 105.030 kb on + strand, within GFF2522 at 105.030 kb on + strand, within GFF2522 at 105.031 kb on - strand, within GFF2522 at 105.094 kb on - strand, within GFF2522 at 105.094 kb on - strand, within GFF2522 at 105.108 kb on + strand, within GFF2522 at 105.109 kb on - strand, within GFF2522
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 103,414 + GFF2519 0.39 +0.7 103,414 + GFF2519 0.39 +0.5 103,414 + GFF2519 0.39 -0.2 103,415 - GFF2519 0.40 +0.9 103,415 - GFF2519 0.40 -0.1 103,489 - +0.6 103,502 + -0.5 103,502 + +0.1 103,502 + +0.0 103,502 + +0.9 103,502 + -0.5 103,502 + +0.0 103,503 - +0.1 103,503 - +0.5 103,503 - -0.4 103,503 - -1.7 103,560 + +0.5 103,561 - +0.1 103,561 - -0.5 103,561 - +0.1 103,605 + GFF2520 0.12 +1.1 103,605 + GFF2520 0.12 +1.1 103,606 - GFF2520 0.12 -0.0 103,735 - GFF2520 0.33 +0.7 103,735 - GFF2520 0.33 +0.2 104,073 + GFF2520 0.88 -0.4 104,129 + +0.2 104,130 - +0.0 104,219 + GFF2521 0.14 -0.7 104,219 + GFF2521 0.14 +0.7 104,219 + GFF2521 0.14 +0.1 104,219 + GFF2521 0.14 +0.6 104,219 + GFF2521 0.14 +0.3 104,219 + GFF2521 0.14 +0.3 104,219 + GFF2521 0.14 +0.5 104,219 + GFF2521 0.14 +0.1 104,219 + GFF2521 0.14 +1.7 104,220 + GFF2521 0.14 -0.2 104,220 - GFF2521 0.14 -0.9 104,220 - GFF2521 0.14 -0.5 104,244 - GFF2521 0.20 +0.0 104,507 + GFF2521 0.79 -0.0 104,507 + GFF2521 0.79 -1.0 104,508 - GFF2521 0.79 -0.2 104,600 + +0.6 104,600 + +0.7 104,600 + +0.7 104,600 + +0.4 104,600 + +0.2 104,600 + -0.5 104,601 - -0.5 104,601 - +0.7 104,601 - -0.4 104,601 - +0.3 104,601 - +0.3 104,603 - +1.1 104,607 + +0.1 104,609 + +0.9 104,609 + +0.3 104,610 - +0.7 104,610 - +0.6 104,610 - -0.6 104,640 + +1.0 104,650 - -0.1 104,865 + GFF2522 0.30 +0.1 104,865 + GFF2522 0.30 -0.7 104,865 + GFF2522 0.30 +0.2 104,866 - GFF2522 0.31 -0.3 104,866 - GFF2522 0.31 +0.3 104,866 - GFF2522 0.31 +0.1 104,866 - GFF2522 0.31 +0.6 104,910 + GFF2522 0.36 -0.1 104,910 + GFF2522 0.36 +0.5 105,030 + GFF2522 0.50 +0.2 105,030 + GFF2522 0.50 +0.1 105,030 + GFF2522 0.50 -0.3 105,031 - GFF2522 0.50 +0.6 105,094 - GFF2522 0.57 +0.1 105,094 - GFF2522 0.57 +0.3 105,108 + GFF2522 0.59 +0.2 105,109 - GFF2522 0.59 -0.9
Or see this region's nucleotide sequence