Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF248 and GFF249 are separated by 23 nucleotides GFF249 and GFF250 are separated by 26 nucleotides GFF250 and GFF251 are separated by 204 nucleotides
GFF248 - Glycine oxidase ThiO (EC 1.4.3.19), at 264,424 to 265,506
GFF248
GFF249 - Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7), at 265,530 to 266,378
GFF249
GFF250 - Predicted hydroxymethylpyrimidine transporter CytX, at 266,405 to 267,712
GFF250
GFF251 - hypothetical protein, at 267,917 to 268,714
GFF251
Position (kb) 266
267
268 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 265.560 kb on + strand at 265.560 kb on + strand at 265.560 kb on + strand at 265.560 kb on + strand at 265.560 kb on + strand at 265.560 kb on + strand at 265.843 kb on - strand, within GFF249 at 266.218 kb on - strand, within GFF249 at 266.268 kb on + strand, within GFF249 at 266.269 kb on - strand, within GFF249 at 266.269 kb on - strand, within GFF249 at 266.304 kb on + strand at 266.305 kb on - strand at 266.529 kb on + strand at 266.530 kb on - strand at 266.530 kb on - strand at 266.530 kb on - strand at 266.530 kb on - strand at 266.631 kb on + strand, within GFF250 at 266.631 kb on + strand, within GFF250 at 266.632 kb on - strand, within GFF250 at 266.632 kb on - strand, within GFF250 at 266.928 kb on + strand, within GFF250 at 266.928 kb on + strand, within GFF250 at 266.929 kb on - strand, within GFF250 at 266.952 kb on + strand, within GFF250 at 267.435 kb on + strand, within GFF250 at 267.436 kb on - strand, within GFF250 at 267.436 kb on - strand, within GFF250 at 267.436 kb on - strand, within GFF250 at 267.576 kb on + strand, within GFF250 at 267.810 kb on + strand at 267.811 kb on - strand at 267.811 kb on - strand at 267.811 kb on - strand at 267.909 kb on + strand at 267.910 kb on - strand at 267.911 kb on + strand at 268.041 kb on + strand, within GFF251 at 268.041 kb on + strand, within GFF251 at 268.041 kb on + strand, within GFF251 at 268.041 kb on + strand, within GFF251 at 268.041 kb on + strand, within GFF251 at 268.041 kb on + strand, within GFF251 at 268.042 kb on - strand, within GFF251 at 268.042 kb on - strand, within GFF251 at 268.042 kb on - strand, within GFF251 at 268.042 kb on - strand, within GFF251 at 268.162 kb on - strand, within GFF251 at 268.317 kb on + strand, within GFF251 at 268.317 kb on + strand, within GFF251 at 268.318 kb on - strand, within GFF251 at 268.318 kb on - strand, within GFF251 at 268.318 kb on - strand, within GFF251 at 268.318 kb on - strand, within GFF251 at 268.509 kb on + strand, within GFF251 at 268.587 kb on + strand, within GFF251 at 268.588 kb on - strand, within GFF251 at 268.588 kb on - strand, within GFF251
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 265,560 + -1.7 265,560 + -1.7 265,560 + -3.5 265,560 + -0.2 265,560 + -1.1 265,560 + -4.0 265,843 - GFF249 0.37 -4.6 266,218 - GFF249 0.81 -3.6 266,268 + GFF249 0.87 -1.5 266,269 - GFF249 0.87 -0.6 266,269 - GFF249 0.87 -2.9 266,304 + -3.7 266,305 - -2.2 266,529 + -0.0 266,530 - +0.1 266,530 - -0.1 266,530 - -0.0 266,530 - -0.1 266,631 + GFF250 0.17 -0.3 266,631 + GFF250 0.17 +0.1 266,632 - GFF250 0.17 -2.6 266,632 - GFF250 0.17 -0.4 266,928 + GFF250 0.40 +0.7 266,928 + GFF250 0.40 -0.3 266,929 - GFF250 0.40 -0.3 266,952 + GFF250 0.42 +0.1 267,435 + GFF250 0.79 -0.7 267,436 - GFF250 0.79 +0.0 267,436 - GFF250 0.79 -1.0 267,436 - GFF250 0.79 +0.1 267,576 + GFF250 0.90 -0.2 267,810 + +0.3 267,811 - -0.4 267,811 - +0.1 267,811 - +0.0 267,909 + +0.0 267,910 - -0.9 267,911 + -1.0 268,041 + GFF251 0.16 +0.5 268,041 + GFF251 0.16 -0.4 268,041 + GFF251 0.16 +1.4 268,041 + GFF251 0.16 +0.4 268,041 + GFF251 0.16 -0.1 268,041 + GFF251 0.16 -0.4 268,042 - GFF251 0.16 -0.9 268,042 - GFF251 0.16 -0.5 268,042 - GFF251 0.16 -0.5 268,042 - GFF251 0.16 -0.2 268,162 - GFF251 0.31 -0.9 268,317 + GFF251 0.50 -0.1 268,317 + GFF251 0.50 +0.6 268,318 - GFF251 0.50 -1.8 268,318 - GFF251 0.50 +0.3 268,318 - GFF251 0.50 -0.3 268,318 - GFF251 0.50 +0.4 268,509 + GFF251 0.74 -0.2 268,587 + GFF251 0.84 -0.5 268,588 - GFF251 0.84 -1.6 268,588 - GFF251 0.84 -0.2
Or see this region's nucleotide sequence