Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF215

Experiment: Ying_OrganicAcid7 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF214 and GFF215 are separated by 20 nucleotidesGFF215 and GFF216 are separated by 102 nucleotides GFF214 - sensory box histidine kinase/response regulator, at 233,087 to 235,279 GFF214 GFF215 - hypothetical protein, at 235,300 to 237,249 GFF215 GFF216 - Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-), at 237,352 to 238,362 GFF216 Position (kb) 235 236 237 238Strain fitness (log2 ratio) -2 -1 0 1 2at 234.326 kb on + strand, within GFF214at 234.326 kb on + strand, within GFF214at 234.326 kb on + strand, within GFF214at 234.326 kb on + strand, within GFF214at 234.327 kb on - strand, within GFF214at 234.327 kb on - strand, within GFF214at 234.327 kb on - strand, within GFF214at 234.327 kb on - strand, within GFF214at 234.327 kb on - strand, within GFF214at 234.549 kb on - strand, within GFF214at 235.098 kb on + strandat 235.099 kb on - strandat 235.099 kb on - strandat 235.353 kb on - strandat 235.433 kb on + strandat 235.434 kb on - strandat 235.434 kb on - strandat 235.434 kb on - strandat 235.445 kb on + strandat 235.445 kb on + strandat 235.508 kb on + strand, within GFF215at 235.568 kb on + strand, within GFF215at 235.568 kb on + strand, within GFF215at 235.569 kb on - strand, within GFF215at 235.569 kb on - strand, within GFF215at 235.668 kb on - strand, within GFF215at 235.727 kb on + strand, within GFF215at 235.727 kb on + strand, within GFF215at 235.727 kb on + strand, within GFF215at 235.728 kb on - strand, within GFF215at 235.728 kb on - strand, within GFF215at 235.728 kb on - strand, within GFF215at 235.728 kb on - strand, within GFF215at 235.728 kb on - strand, within GFF215at 235.916 kb on + strand, within GFF215at 235.916 kb on + strand, within GFF215at 235.916 kb on + strand, within GFF215at 235.916 kb on + strand, within GFF215at 235.917 kb on - strand, within GFF215at 235.917 kb on - strand, within GFF215at 235.917 kb on - strand, within GFF215at 235.917 kb on - strand, within GFF215at 235.940 kb on + strand, within GFF215at 235.941 kb on - strand, within GFF215at 235.941 kb on - strand, within GFF215at 235.941 kb on - strand, within GFF215at 235.941 kb on - strand, within GFF215at 235.941 kb on - strand, within GFF215at 235.946 kb on + strand, within GFF215at 235.946 kb on + strand, within GFF215at 235.946 kb on + strand, within GFF215at 235.946 kb on + strand, within GFF215at 236.037 kb on - strand, within GFF215at 236.037 kb on - strand, within GFF215at 236.037 kb on - strand, within GFF215at 236.117 kb on + strand, within GFF215at 236.118 kb on - strand, within GFF215at 236.118 kb on - strand, within GFF215at 236.276 kb on + strand, within GFF215at 236.276 kb on + strand, within GFF215at 236.277 kb on - strand, within GFF215at 236.421 kb on - strand, within GFF215at 236.421 kb on - strand, within GFF215at 236.513 kb on + strand, within GFF215at 236.513 kb on + strand, within GFF215at 236.546 kb on + strand, within GFF215at 236.546 kb on + strand, within GFF215at 236.546 kb on + strand, within GFF215at 236.547 kb on - strand, within GFF215at 236.547 kb on - strand, within GFF215at 236.547 kb on - strand, within GFF215at 236.555 kb on + strand, within GFF215at 236.556 kb on - strand, within GFF215at 236.780 kb on + strand, within GFF215at 236.781 kb on - strand, within GFF215at 236.781 kb on - strand, within GFF215at 236.781 kb on - strand, within GFF215at 236.781 kb on - strand, within GFF215at 236.916 kb on - strand, within GFF215at 237.014 kb on + strand, within GFF215at 237.270 kb on - strandat 237.316 kb on + strandat 237.359 kb on + strandat 237.359 kb on + strandat 237.360 kb on - strandat 237.360 kb on - strandat 237.395 kb on + strandat 237.395 kb on + strandat 237.395 kb on + strandat 237.396 kb on - strandat 237.396 kb on - strandat 237.396 kb on - strandat 237.396 kb on - strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.410 kb on + strandat 237.410 kb on + strandat 237.410 kb on + strandat 237.410 kb on + strandat 237.411 kb on - strandat 237.530 kb on + strand, within GFF216at 237.530 kb on + strand, within GFF216at 237.530 kb on + strand, within GFF216at 237.530 kb on + strand, within GFF216at 237.530 kb on + strand, within GFF216at 237.530 kb on + strand, within GFF216at 237.531 kb on - strand, within GFF216at 237.863 kb on + strand, within GFF216at 237.939 kb on - strand, within GFF216at 237.939 kb on - strand, within GFF216at 237.939 kb on - strand, within GFF216at 237.939 kb on - strand, within GFF216at 238.016 kb on + strand, within GFF216at 238.016 kb on + strand, within GFF216at 238.016 kb on + strand, within GFF216at 238.016 kb on + strand, within GFF216at 238.017 kb on - strand, within GFF216at 238.017 kb on - strand, within GFF216at 238.017 kb on - strand, within GFF216at 238.017 kb on - strand, within GFF216

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1
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234,326 + GFF214 0.56 +0.3
234,326 + GFF214 0.56 -0.2
234,326 + GFF214 0.56 -0.9
234,326 + GFF214 0.56 -0.0
234,327 - GFF214 0.57 +0.4
234,327 - GFF214 0.57 -0.0
234,327 - GFF214 0.57 +0.3
234,327 - GFF214 0.57 -0.3
234,327 - GFF214 0.57 +0.2
234,549 - GFF214 0.67 -0.5
235,098 + +0.4
235,099 - -0.1
235,099 - +0.5
235,353 - -0.5
235,433 + +0.1
235,434 - -1.0
235,434 - +0.7
235,434 - -0.7
235,445 + +0.1
235,445 + -0.6
235,508 + GFF215 0.11 -0.2
235,568 + GFF215 0.14 -0.2
235,568 + GFF215 0.14 -0.7
235,569 - GFF215 0.14 +0.2
235,569 - GFF215 0.14 -0.1
235,668 - GFF215 0.19 +0.0
235,727 + GFF215 0.22 +0.2
235,727 + GFF215 0.22 +2.0
235,727 + GFF215 0.22 +0.2
235,728 - GFF215 0.22 -1.3
235,728 - GFF215 0.22 -0.0
235,728 - GFF215 0.22 -2.4
235,728 - GFF215 0.22 -0.6
235,728 - GFF215 0.22 -0.2
235,916 + GFF215 0.32 -0.1
235,916 + GFF215 0.32 +0.7
235,916 + GFF215 0.32 -0.4
235,916 + GFF215 0.32 +0.0
235,917 - GFF215 0.32 +0.3
235,917 - GFF215 0.32 +0.8
235,917 - GFF215 0.32 -0.3
235,917 - GFF215 0.32 -0.1
235,940 + GFF215 0.33 -1.1
235,941 - GFF215 0.33 +0.8
235,941 - GFF215 0.33 -0.4
235,941 - GFF215 0.33 -0.2
235,941 - GFF215 0.33 -1.2
235,941 - GFF215 0.33 -0.7
235,946 + GFF215 0.33 -1.2
235,946 + GFF215 0.33 +0.0
235,946 + GFF215 0.33 +0.4
235,946 + GFF215 0.33 -0.7
236,037 - GFF215 0.38 -0.3
236,037 - GFF215 0.38 -0.8
236,037 - GFF215 0.38 +0.4
236,117 + GFF215 0.42 -0.5
236,118 - GFF215 0.42 -1.4
236,118 - GFF215 0.42 -0.1
236,276 + GFF215 0.50 -0.5
236,276 + GFF215 0.50 +0.2
236,277 - GFF215 0.50 +0.5
236,421 - GFF215 0.57 +0.2
236,421 - GFF215 0.57 -0.1
236,513 + GFF215 0.62 -0.4
236,513 + GFF215 0.62 +0.5
236,546 + GFF215 0.64 +0.1
236,546 + GFF215 0.64 -0.0
236,546 + GFF215 0.64 -0.1
236,547 - GFF215 0.64 -0.8
236,547 - GFF215 0.64 +0.0
236,547 - GFF215 0.64 +0.1
236,555 + GFF215 0.64 -0.2
236,556 - GFF215 0.64 +0.1
236,780 + GFF215 0.76 +0.0
236,781 - GFF215 0.76 +0.3
236,781 - GFF215 0.76 -0.2
236,781 - GFF215 0.76 +1.0
236,781 - GFF215 0.76 -0.2
236,916 - GFF215 0.83 +0.2
237,014 + GFF215 0.88 -0.3
237,270 - -0.3
237,316 + -0.0
237,359 + +0.5
237,359 + +0.4
237,360 - +0.1
237,360 - +0.3
237,395 + +0.5
237,395 + -1.0
237,395 + -0.7
237,396 - -0.0
237,396 - +0.4
237,396 - +0.5
237,396 - +0.8
237,401 + +0.2
237,401 + +0.1
237,401 + -0.8
237,401 + +1.4
237,401 + +0.2
237,401 + -0.3
237,401 + -0.4
237,401 + -0.3
237,401 + -0.4
237,401 + +0.4
237,401 + +0.3
237,402 - -0.0
237,402 - -0.5
237,402 - -0.0
237,402 - -0.1
237,402 - -0.1
237,402 - -1.6
237,402 - -1.6
237,402 - +0.9
237,402 - -0.9
237,402 - +0.1
237,402 - -0.7
237,402 - +0.4
237,402 - +0.0
237,402 - -0.7
237,402 - -0.0
237,410 + +0.3
237,410 + -0.9
237,410 + -0.0
237,410 + -0.1
237,411 - -0.2
237,530 + GFF216 0.18 -1.0
237,530 + GFF216 0.18 +0.2
237,530 + GFF216 0.18 +0.8
237,530 + GFF216 0.18 +0.6
237,530 + GFF216 0.18 +0.9
237,530 + GFF216 0.18 +0.0
237,531 - GFF216 0.18 -1.7
237,863 + GFF216 0.51 +0.5
237,939 - GFF216 0.58 +0.8
237,939 - GFF216 0.58 +0.7
237,939 - GFF216 0.58 +0.6
237,939 - GFF216 0.58 -0.3
238,016 + GFF216 0.66 +0.1
238,016 + GFF216 0.66 +0.4
238,016 + GFF216 0.66 +0.1
238,016 + GFF216 0.66 -0.2
238,017 - GFF216 0.66 -0.1
238,017 - GFF216 0.66 -0.3
238,017 - GFF216 0.66 +0.9
238,017 - GFF216 0.66 -0.2

Or see this region's nucleotide sequence