Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1660 and GFF1661 are separated by 106 nucleotides GFF1661 and GFF1662 overlap by 17 nucleotides GFF1662 and GFF1663 are separated by 14 nucleotides
GFF1660 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 512,465 to 514,837
GFF1660
GFF1661 - Phosphoglycerate mutase (EC 5.4.2.1), at 514,944 to 515,585
GFF1661
GFF1662 - low-specificity D-threonine aldolase, at 515,569 to 516,753
GFF1662
GFF1663 - Sporulation domain protein, at 516,768 to 517,829
GFF1663
Position (kb) 515
516
517 Strain fitness (log2 ratio) -1
0
1 at 514.650 kb on + strand at 514.651 kb on - strand at 514.651 kb on - strand at 514.651 kb on - strand at 514.651 kb on - strand at 514.651 kb on - strand at 514.704 kb on + strand at 514.705 kb on - strand at 515.713 kb on + strand, within GFF1662 at 515.714 kb on - strand, within GFF1662 at 515.714 kb on - strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.870 kb on - strand, within GFF1662 at 515.870 kb on - strand, within GFF1662 at 515.870 kb on - strand, within GFF1662 at 515.870 kb on - strand, within GFF1662 at 515.870 kb on - strand, within GFF1662 at 515.870 kb on - strand, within GFF1662 at 515.870 kb on - strand, within GFF1662 at 515.870 kb on - strand, within GFF1662 at 516.157 kb on + strand, within GFF1662 at 516.157 kb on + strand, within GFF1662 at 516.157 kb on + strand, within GFF1662 at 516.158 kb on - strand, within GFF1662 at 516.158 kb on - strand, within GFF1662 at 516.158 kb on - strand, within GFF1662 at 516.355 kb on + strand, within GFF1662 at 516.355 kb on + strand, within GFF1662 at 516.355 kb on + strand, within GFF1662 at 516.355 kb on + strand, within GFF1662 at 516.355 kb on + strand, within GFF1662 at 516.356 kb on - strand, within GFF1662 at 516.356 kb on - strand, within GFF1662 at 516.356 kb on - strand, within GFF1662 at 517.481 kb on - strand, within GFF1663 at 517.612 kb on + strand, within GFF1663 at 517.613 kb on - strand, within GFF1663 at 517.613 kb on - strand, within GFF1663 at 517.735 kb on + strand at 517.736 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 514,650 + +0.2 514,651 - -0.3 514,651 - +0.3 514,651 - +0.1 514,651 - +0.2 514,651 - -0.5 514,704 + -0.1 514,705 - +0.4 515,713 + GFF1662 0.12 -0.3 515,714 - GFF1662 0.12 +0.0 515,714 - GFF1662 0.12 -0.8 515,869 + GFF1662 0.25 -0.3 515,869 + GFF1662 0.25 +0.5 515,869 + GFF1662 0.25 -0.4 515,869 + GFF1662 0.25 +0.1 515,869 + GFF1662 0.25 +0.9 515,869 + GFF1662 0.25 +0.2 515,869 + GFF1662 0.25 +0.2 515,869 + GFF1662 0.25 +1.0 515,869 + GFF1662 0.25 +0.1 515,869 + GFF1662 0.25 -0.1 515,869 + GFF1662 0.25 -0.3 515,869 + GFF1662 0.25 -1.7 515,869 + GFF1662 0.25 +0.3 515,870 - GFF1662 0.25 -1.6 515,870 - GFF1662 0.25 -0.4 515,870 - GFF1662 0.25 -0.3 515,870 - GFF1662 0.25 -0.3 515,870 - GFF1662 0.25 +0.3 515,870 - GFF1662 0.25 +0.4 515,870 - GFF1662 0.25 -0.3 515,870 - GFF1662 0.25 +0.5 516,157 + GFF1662 0.50 -0.3 516,157 + GFF1662 0.50 -0.6 516,157 + GFF1662 0.50 +0.2 516,158 - GFF1662 0.50 +0.4 516,158 - GFF1662 0.50 +1.3 516,158 - GFF1662 0.50 +0.0 516,355 + GFF1662 0.66 +0.7 516,355 + GFF1662 0.66 +0.1 516,355 + GFF1662 0.66 -0.3 516,355 + GFF1662 0.66 -0.9 516,355 + GFF1662 0.66 +0.0 516,356 - GFF1662 0.66 +0.9 516,356 - GFF1662 0.66 -0.8 516,356 - GFF1662 0.66 -0.0 517,481 - GFF1663 0.67 -1.5 517,612 + GFF1663 0.79 +0.1 517,613 - GFF1663 0.80 -0.0 517,613 - GFF1663 0.80 -0.3 517,735 + +0.2 517,736 - -1.5
Or see this region's nucleotide sequence