Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1652 and GFF1653 are separated by 20 nucleotides GFF1653 and GFF1654 are separated by 70 nucleotides GFF1654 and GFF1655 overlap by 4 nucleotides GFF1655 and GFF1656 are separated by 3 nucleotides
GFF1652 - similar to protocatechuate 4,5-dioxygenase beta chain, at 505,857 to 506,702
GFF1652
GFF1653 - Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8), at 506,723 to 507,073
GFF1653
GFF1654 - Transcriptional regulator, LysR family, at 507,144 to 508,061
GFF1654
GFF1655 - hypothetical protein, at 508,058 to 508,735
GFF1655
GFF1656 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 508,739 to 509,770
GFF1656
Position (kb) 507
508
509 Strain fitness (log2 ratio) -1
0
1 at 506.215 kb on + strand, within GFF1652 at 506.467 kb on + strand, within GFF1652 at 506.537 kb on - strand, within GFF1652 at 506.838 kb on + strand, within GFF1653 at 506.838 kb on + strand, within GFF1653 at 506.839 kb on - strand, within GFF1653 at 506.841 kb on + strand, within GFF1653 at 506.842 kb on - strand, within GFF1653 at 506.931 kb on + strand, within GFF1653 at 506.931 kb on + strand, within GFF1653 at 506.932 kb on - strand, within GFF1653 at 506.932 kb on - strand, within GFF1653 at 506.932 kb on - strand, within GFF1653 at 506.932 kb on - strand, within GFF1653 at 507.133 kb on + strand at 507.151 kb on + strand at 507.684 kb on + strand, within GFF1654 at 507.684 kb on + strand, within GFF1654 at 507.684 kb on + strand, within GFF1654 at 507.684 kb on + strand, within GFF1654 at 507.684 kb on + strand, within GFF1654 at 507.685 kb on - strand, within GFF1654 at 507.685 kb on - strand, within GFF1654 at 507.756 kb on + strand, within GFF1654 at 507.757 kb on - strand, within GFF1654 at 507.972 kb on + strand at 507.973 kb on - strand at 508.059 kb on + strand at 508.083 kb on + strand at 508.083 kb on - strand at 508.084 kb on - strand at 508.095 kb on + strand at 508.189 kb on - strand, within GFF1655 at 508.557 kb on + strand, within GFF1655 at 508.557 kb on + strand, within GFF1655 at 508.557 kb on + strand, within GFF1655 at 508.558 kb on - strand, within GFF1655 at 508.786 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 506,215 + GFF1652 0.42 -0.7 506,467 + GFF1652 0.72 -0.6 506,537 - GFF1652 0.80 +0.1 506,838 + GFF1653 0.33 +0.1 506,838 + GFF1653 0.33 +0.5 506,839 - GFF1653 0.33 +0.5 506,841 + GFF1653 0.34 -0.3 506,842 - GFF1653 0.34 +1.2 506,931 + GFF1653 0.59 -0.2 506,931 + GFF1653 0.59 +0.2 506,932 - GFF1653 0.60 -0.3 506,932 - GFF1653 0.60 -0.1 506,932 - GFF1653 0.60 -0.4 506,932 - GFF1653 0.60 +0.4 507,133 + -0.1 507,151 + +0.2 507,684 + GFF1654 0.59 +0.0 507,684 + GFF1654 0.59 -0.5 507,684 + GFF1654 0.59 -1.0 507,684 + GFF1654 0.59 -0.1 507,684 + GFF1654 0.59 -1.2 507,685 - GFF1654 0.59 -0.0 507,685 - GFF1654 0.59 -0.1 507,756 + GFF1654 0.67 -0.0 507,757 - GFF1654 0.67 +0.2 507,972 + -0.1 507,973 - +0.6 508,059 + -1.1 508,083 + -0.1 508,083 - -0.1 508,084 - +0.1 508,095 + +0.3 508,189 - GFF1655 0.19 +0.2 508,557 + GFF1655 0.74 -0.2 508,557 + GFF1655 0.74 -0.6 508,557 + GFF1655 0.74 +0.4 508,558 - GFF1655 0.74 +0.4 508,786 - -0.1
Or see this region's nucleotide sequence