Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1444

Experiment: Ying_OrganicAcid7 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1443 and GFF1444 are separated by 41 nucleotidesGFF1444 and GFF1445 are separated by 230 nucleotides GFF1443 - Flagellin protein FlaA, at 298,265 to 299,413 GFF1443 GFF1444 - Flagellin protein flaA, at 299,455 to 300,600 GFF1444 GFF1445 - Flagellin protein flaA, at 300,831 to 302,003 GFF1445 Position (kb) 299 300 301Strain fitness (log2 ratio) -1 0 1at 298.973 kb on + strand, within GFF1443at 300.826 kb on + strandat 300.826 kb on + strandat 300.831 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1
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298,973 + GFF1443 0.62 -0.7
300,826 + +0.0
300,826 + -1.0
300,831 - -0.1

Or see this region's nucleotide sequence