Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1366

Experiment: Ying_OrganicAcid7 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1365 and GFF1366 overlap by 4 nucleotidesGFF1366 and GFF1367 are separated by 7 nucleotidesGFF1367 and GFF1368 are separated by 65 nucleotides GFF1365 - Putative glutathione transporter, ATP-binding component, at 220,802 to 221,878 GFF1365 GFF1366 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 221,875 to 222,849 GFF1366 GFF1367 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 222,857 to 223,768 GFF1367 GFF1368 - Putative gluthatione transporter,solute-binding component, at 223,834 to 225,420 GFF1368 Position (kb) 221 222 223Strain fitness (log2 ratio) -1 0 1 2at 221.023 kb on + strand, within GFF1365at 221.023 kb on + strand, within GFF1365at 221.023 kb on + strand, within GFF1365at 221.025 kb on + strand, within GFF1365at 221.026 kb on - strand, within GFF1365at 221.026 kb on - strand, within GFF1365at 221.026 kb on - strand, within GFF1365at 221.026 kb on - strand, within GFF1365at 221.026 kb on - strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.089 kb on - strand, within GFF1365at 221.089 kb on - strand, within GFF1365at 221.089 kb on - strand, within GFF1365at 221.089 kb on - strand, within GFF1365at 221.089 kb on - strand, within GFF1365at 221.089 kb on - strand, within GFF1365at 221.134 kb on + strand, within GFF1365at 221.135 kb on - strand, within GFF1365at 221.151 kb on + strand, within GFF1365at 221.151 kb on + strand, within GFF1365at 221.151 kb on + strand, within GFF1365at 221.151 kb on + strand, within GFF1365at 221.151 kb on + strand, within GFF1365at 221.151 kb on + strand, within GFF1365at 221.152 kb on - strand, within GFF1365at 221.152 kb on - strand, within GFF1365at 221.152 kb on - strand, within GFF1365at 221.322 kb on + strand, within GFF1365at 221.323 kb on - strand, within GFF1365at 221.472 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.587 kb on - strand, within GFF1365at 221.587 kb on - strand, within GFF1365at 221.587 kb on - strand, within GFF1365at 221.587 kb on - strand, within GFF1365at 221.587 kb on - strand, within GFF1365at 221.993 kb on + strand, within GFF1366at 221.994 kb on - strand, within GFF1366at 221.994 kb on - strand, within GFF1366at 221.994 kb on - strand, within GFF1366at 221.994 kb on - strand, within GFF1366at 221.994 kb on - strand, within GFF1366at 222.104 kb on + strand, within GFF1366at 222.105 kb on - strand, within GFF1366at 222.105 kb on - strand, within GFF1366at 222.167 kb on + strand, within GFF1366at 222.167 kb on + strand, within GFF1366at 222.167 kb on + strand, within GFF1366at 222.167 kb on + strand, within GFF1366at 222.168 kb on - strand, within GFF1366at 222.168 kb on - strand, within GFF1366at 222.168 kb on - strand, within GFF1366at 222.168 kb on - strand, within GFF1366at 222.533 kb on + strand, within GFF1366at 222.534 kb on - strand, within GFF1366at 222.534 kb on - strand, within GFF1366at 222.534 kb on - strand, within GFF1366at 222.978 kb on + strand, within GFF1367at 222.978 kb on + strand, within GFF1367at 222.978 kb on + strand, within GFF1367at 222.978 kb on + strand, within GFF1367at 222.978 kb on + strand, within GFF1367at 222.979 kb on - strand, within GFF1367at 222.979 kb on - strand, within GFF1367at 222.979 kb on - strand, within GFF1367at 223.185 kb on + strand, within GFF1367at 223.185 kb on + strand, within GFF1367at 223.185 kb on + strand, within GFF1367at 223.185 kb on + strand, within GFF1367at 223.185 kb on + strand, within GFF1367at 223.186 kb on - strand, within GFF1367at 223.186 kb on - strand, within GFF1367at 223.186 kb on - strand, within GFF1367at 223.186 kb on - strand, within GFF1367at 223.233 kb on + strand, within GFF1367at 223.233 kb on + strand, within GFF1367at 223.234 kb on - strand, within GFF1367at 223.234 kb on - strand, within GFF1367at 223.500 kb on + strand, within GFF1367at 223.500 kb on + strand, within GFF1367at 223.501 kb on - strand, within GFF1367at 223.501 kb on - strand, within GFF1367at 223.836 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1
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221,023 + GFF1365 0.21 -0.2
221,023 + GFF1365 0.21 -0.2
221,023 + GFF1365 0.21 +0.4
221,025 + GFF1365 0.21 +0.5
221,026 - GFF1365 0.21 +0.1
221,026 - GFF1365 0.21 -0.0
221,026 - GFF1365 0.21 +1.4
221,026 - GFF1365 0.21 +0.7
221,026 - GFF1365 0.21 -1.2
221,088 + GFF1365 0.27 -0.6
221,088 + GFF1365 0.27 -0.3
221,088 + GFF1365 0.27 +0.1
221,088 + GFF1365 0.27 +0.4
221,088 + GFF1365 0.27 -1.3
221,088 + GFF1365 0.27 -0.4
221,088 + GFF1365 0.27 -0.1
221,088 + GFF1365 0.27 +0.1
221,089 - GFF1365 0.27 +0.3
221,089 - GFF1365 0.27 -1.7
221,089 - GFF1365 0.27 +1.0
221,089 - GFF1365 0.27 +0.1
221,089 - GFF1365 0.27 -1.0
221,089 - GFF1365 0.27 +0.1
221,134 + GFF1365 0.31 +0.3
221,135 - GFF1365 0.31 +0.7
221,151 + GFF1365 0.32 +0.7
221,151 + GFF1365 0.32 +0.4
221,151 + GFF1365 0.32 +0.3
221,151 + GFF1365 0.32 +0.1
221,151 + GFF1365 0.32 +0.1
221,151 + GFF1365 0.32 -0.4
221,152 - GFF1365 0.32 +0.5
221,152 - GFF1365 0.32 -0.9
221,152 - GFF1365 0.32 -0.5
221,322 + GFF1365 0.48 -0.6
221,323 - GFF1365 0.48 -0.4
221,472 + GFF1365 0.62 -0.3
221,586 + GFF1365 0.73 +0.9
221,586 + GFF1365 0.73 +0.1
221,586 + GFF1365 0.73 +0.0
221,586 + GFF1365 0.73 -0.2
221,586 + GFF1365 0.73 -0.4
221,586 + GFF1365 0.73 -0.0
221,586 + GFF1365 0.73 -0.1
221,587 - GFF1365 0.73 +0.0
221,587 - GFF1365 0.73 -0.6
221,587 - GFF1365 0.73 +0.1
221,587 - GFF1365 0.73 -0.1
221,587 - GFF1365 0.73 +0.1
221,993 + GFF1366 0.12 +0.4
221,994 - GFF1366 0.12 -0.4
221,994 - GFF1366 0.12 +0.2
221,994 - GFF1366 0.12 +0.2
221,994 - GFF1366 0.12 +0.4
221,994 - GFF1366 0.12 -0.2
222,104 + GFF1366 0.23 +0.2
222,105 - GFF1366 0.24 +0.0
222,105 - GFF1366 0.24 -0.4
222,167 + GFF1366 0.30 -0.4
222,167 + GFF1366 0.30 -0.8
222,167 + GFF1366 0.30 -0.4
222,167 + GFF1366 0.30 -0.1
222,168 - GFF1366 0.30 -0.5
222,168 - GFF1366 0.30 -0.7
222,168 - GFF1366 0.30 +0.2
222,168 - GFF1366 0.30 -0.4
222,533 + GFF1366 0.67 -0.7
222,534 - GFF1366 0.68 +0.8
222,534 - GFF1366 0.68 +0.2
222,534 - GFF1366 0.68 -0.0
222,978 + GFF1367 0.13 -0.1
222,978 + GFF1367 0.13 -0.9
222,978 + GFF1367 0.13 -1.1
222,978 + GFF1367 0.13 +0.1
222,978 + GFF1367 0.13 -0.3
222,979 - GFF1367 0.13 -0.2
222,979 - GFF1367 0.13 +0.6
222,979 - GFF1367 0.13 -0.2
223,185 + GFF1367 0.36 +0.4
223,185 + GFF1367 0.36 +0.1
223,185 + GFF1367 0.36 -0.0
223,185 + GFF1367 0.36 +0.3
223,185 + GFF1367 0.36 +0.2
223,186 - GFF1367 0.36 +0.9
223,186 - GFF1367 0.36 -1.7
223,186 - GFF1367 0.36 +0.4
223,186 - GFF1367 0.36 +0.4
223,233 + GFF1367 0.41 +0.3
223,233 + GFF1367 0.41 +2.0
223,234 - GFF1367 0.41 +0.4
223,234 - GFF1367 0.41 +0.1
223,500 + GFF1367 0.71 +1.2
223,500 + GFF1367 0.71 +0.3
223,501 - GFF1367 0.71 -0.4
223,501 - GFF1367 0.71 +1.4
223,836 - -0.6

Or see this region's nucleotide sequence