Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1184 and GFF1185 are separated by 0 nucleotides GFF1185 and GFF1186 overlap by 4 nucleotides GFF1186 and GFF1187 are separated by 12 nucleotides
GFF1184 - hypothetical protein, at 43,096 to 44,622
GFF1184
GFF1185 - Heme oxygenase HemO, associated with heme uptake, at 44,623 to 45,267
GFF1185
GFF1186 - General secretion pathway protein N, at 45,264 to 46,040
GFF1186
GFF1187 - Hypothetical protein DUF454, at 46,053 to 46,442
GFF1187
Position (kb) 44
45
46 Strain fitness (log2 ratio) -1
0
1
2 at 43.723 kb on + strand, within GFF1184 at 43.798 kb on + strand, within GFF1184 at 43.798 kb on + strand, within GFF1184 at 43.798 kb on + strand, within GFF1184 at 43.799 kb on - strand, within GFF1184 at 43.799 kb on - strand, within GFF1184 at 43.799 kb on - strand, within GFF1184 at 43.799 kb on - strand, within GFF1184 at 43.874 kb on - strand, within GFF1184 at 43.961 kb on - strand, within GFF1184 at 44.032 kb on + strand, within GFF1184 at 44.032 kb on + strand, within GFF1184 at 44.032 kb on + strand, within GFF1184 at 44.044 kb on + strand, within GFF1184 at 44.045 kb on - strand, within GFF1184 at 44.428 kb on + strand, within GFF1184 at 44.776 kb on + strand, within GFF1185 at 44.800 kb on + strand, within GFF1185 at 44.800 kb on + strand, within GFF1185 at 44.801 kb on - strand, within GFF1185 at 44.831 kb on - strand, within GFF1185 at 44.831 kb on - strand, within GFF1185 at 45.001 kb on + strand, within GFF1185 at 45.819 kb on + strand, within GFF1186 at 45.820 kb on - strand, within GFF1186 at 45.820 kb on - strand, within GFF1186 at 45.820 kb on - strand, within GFF1186
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 43,723 + GFF1184 0.41 +0.6 43,798 + GFF1184 0.46 +0.2 43,798 + GFF1184 0.46 -0.8 43,798 + GFF1184 0.46 +0.3 43,799 - GFF1184 0.46 +0.2 43,799 - GFF1184 0.46 +1.8 43,799 - GFF1184 0.46 -0.0 43,799 - GFF1184 0.46 +0.0 43,874 - GFF1184 0.51 -0.1 43,961 - GFF1184 0.57 +0.0 44,032 + GFF1184 0.61 -0.0 44,032 + GFF1184 0.61 -0.3 44,032 + GFF1184 0.61 -0.1 44,044 + GFF1184 0.62 -0.8 44,045 - GFF1184 0.62 +0.3 44,428 + GFF1184 0.87 +0.2 44,776 + GFF1185 0.24 +0.4 44,800 + GFF1185 0.27 -0.1 44,800 + GFF1185 0.27 +0.3 44,801 - GFF1185 0.28 +0.4 44,831 - GFF1185 0.32 -0.1 44,831 - GFF1185 0.32 +0.2 45,001 + GFF1185 0.59 +0.0 45,819 + GFF1186 0.71 -1.1 45,820 - GFF1186 0.72 -0.1 45,820 - GFF1186 0.72 +1.0 45,820 - GFF1186 0.72 -0.1
Or see this region's nucleotide sequence