Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1051 and GFF1052 overlap by 4 nucleotides GFF1052 and GFF1053 are separated by 204 nucleotides GFF1053 and GFF1054 overlap by 4 nucleotides
GFF1051 - Mobile element protein, at 789,667 to 789,819
GFF1051
GFF1052 - Mobile element protein, at 789,816 to 790,139
GFF1052
GFF1053 - Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-), at 790,344 to 791,372
GFF1053
GFF1054 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 791,369 to 792,934
GFF1054
Position (kb) 790
791
792 Strain fitness (log2 ratio) -1
0
1 at 789.588 kb on + strand at 789.588 kb on + strand at 789.588 kb on + strand at 789.588 kb on + strand at 789.589 kb on - strand at 789.589 kb on - strand at 789.589 kb on - strand at 790.374 kb on + strand at 790.374 kb on + strand at 790.701 kb on - strand, within GFF1053 at 790.932 kb on - strand, within GFF1053 at 791.005 kb on - strand, within GFF1053 at 791.005 kb on - strand, within GFF1053 at 791.363 kb on + strand at 791.364 kb on - strand at 791.454 kb on - strand at 791.535 kb on - strand, within GFF1054 at 791.537 kb on - strand, within GFF1054 at 791.612 kb on + strand, within GFF1054 at 791.612 kb on + strand, within GFF1054 at 791.612 kb on + strand, within GFF1054 at 791.612 kb on + strand, within GFF1054 at 791.612 kb on + strand, within GFF1054 at 791.613 kb on - strand, within GFF1054 at 791.613 kb on - strand, within GFF1054 at 791.613 kb on - strand, within GFF1054 at 791.613 kb on - strand, within GFF1054 at 791.613 kb on - strand, within GFF1054 at 791.624 kb on + strand, within GFF1054 at 791.625 kb on - strand, within GFF1054 at 792.192 kb on - strand, within GFF1054 at 792.192 kb on - strand, within GFF1054 at 792.192 kb on - strand, within GFF1054 at 792.192 kb on - strand, within GFF1054 at 792.263 kb on + strand, within GFF1054 at 792.264 kb on - strand, within GFF1054 at 792.328 kb on + strand, within GFF1054 at 792.328 kb on + strand, within GFF1054
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 789,588 + -0.3 789,588 + -0.4 789,588 + +0.0 789,588 + -0.4 789,589 - -0.8 789,589 - -0.5 789,589 - +0.3 790,374 + +0.2 790,374 + +0.4 790,701 - GFF1053 0.35 -0.7 790,932 - GFF1053 0.57 -0.1 791,005 - GFF1053 0.64 -1.2 791,005 - GFF1053 0.64 +0.6 791,363 + +0.2 791,364 - +0.1 791,454 - +0.3 791,535 - GFF1054 0.11 +1.0 791,537 - GFF1054 0.11 -0.6 791,612 + GFF1054 0.16 -0.4 791,612 + GFF1054 0.16 -1.1 791,612 + GFF1054 0.16 +0.2 791,612 + GFF1054 0.16 +1.2 791,612 + GFF1054 0.16 +0.8 791,613 - GFF1054 0.16 -0.5 791,613 - GFF1054 0.16 -0.6 791,613 - GFF1054 0.16 -1.0 791,613 - GFF1054 0.16 +0.2 791,613 - GFF1054 0.16 -0.1 791,624 + GFF1054 0.16 +0.2 791,625 - GFF1054 0.16 +0.6 792,192 - GFF1054 0.53 -0.2 792,192 - GFF1054 0.53 +0.0 792,192 - GFF1054 0.53 -1.1 792,192 - GFF1054 0.53 -1.3 792,263 + GFF1054 0.57 +0.0 792,264 - GFF1054 0.57 +0.1 792,328 + GFF1054 0.61 +0.1 792,328 + GFF1054 0.61 +0.2
Or see this region's nucleotide sequence