Experiment: Ying_OrganicAcid7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1018 and GFF1019 are separated by 8 nucleotides GFF1019 and GFF1020 are separated by 9 nucleotides GFF1020 and GFF1021 are separated by 298 nucleotides GFF1021 and GFF1022 are separated by 45 nucleotides
GFF1018 - Aldehyde dehydrogenase A (EC 1.2.1.22), at 756,340 to 757,806
GFF1018
GFF1019 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 757,815 to 758,597
GFF1019
GFF1020 - TRAP transporter solute receptor, unknown substrate 3, at 758,607 to 759,659
GFF1020
GFF1021 - Mobile element protein, at 759,958 to 760,272
GFF1021
GFF1022 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 760,318 to 761,268
GFF1022
Position (kb) 758
759
760 Strain fitness (log2 ratio) -2
-1
0
1
2 at 757.806 kb on + strand at 757.806 kb on + strand at 757.806 kb on + strand at 757.806 kb on + strand at 757.807 kb on - strand at 757.888 kb on + strand at 757.888 kb on + strand at 757.889 kb on - strand at 757.889 kb on - strand at 757.889 kb on - strand at 757.918 kb on - strand, within GFF1019 at 758.027 kb on + strand, within GFF1019 at 758.027 kb on + strand, within GFF1019 at 758.028 kb on - strand, within GFF1019 at 758.028 kb on - strand, within GFF1019 at 758.028 kb on - strand, within GFF1019 at 758.028 kb on - strand, within GFF1019 at 758.028 kb on - strand, within GFF1019 at 758.039 kb on + strand, within GFF1019 at 758.107 kb on + strand, within GFF1019 at 758.107 kb on + strand, within GFF1019 at 758.107 kb on + strand, within GFF1019 at 758.108 kb on - strand, within GFF1019 at 758.108 kb on - strand, within GFF1019 at 758.509 kb on + strand, within GFF1019 at 758.509 kb on + strand, within GFF1019 at 758.509 kb on + strand, within GFF1019 at 758.509 kb on + strand, within GFF1019 at 758.509 kb on + strand, within GFF1019 at 758.509 kb on + strand, within GFF1019 at 758.509 kb on + strand, within GFF1019 at 758.509 kb on + strand, within GFF1019 at 758.510 kb on - strand, within GFF1019 at 758.510 kb on - strand, within GFF1019 at 758.510 kb on - strand, within GFF1019 at 758.510 kb on - strand, within GFF1019 at 758.510 kb on - strand, within GFF1019 at 758.510 kb on - strand, within GFF1019 at 758.510 kb on - strand, within GFF1019 at 758.510 kb on - strand, within GFF1019 at 758.510 kb on - strand, within GFF1019 at 758.510 kb on - strand, within GFF1019 at 758.510 kb on - strand, within GFF1019 at 758.608 kb on + strand at 758.608 kb on + strand at 758.618 kb on + strand at 758.715 kb on + strand, within GFF1020 at 758.715 kb on + strand, within GFF1020 at 758.716 kb on - strand, within GFF1020 at 758.716 kb on - strand, within GFF1020 at 758.765 kb on + strand, within GFF1020 at 758.905 kb on + strand, within GFF1020 at 758.905 kb on + strand, within GFF1020 at 758.906 kb on - strand, within GFF1020 at 758.906 kb on - strand, within GFF1020 at 758.945 kb on - strand, within GFF1020 at 758.945 kb on - strand, within GFF1020 at 758.988 kb on + strand, within GFF1020 at 759.110 kb on - strand, within GFF1020 at 759.125 kb on + strand, within GFF1020 at 759.125 kb on + strand, within GFF1020 at 759.125 kb on + strand, within GFF1020 at 759.125 kb on + strand, within GFF1020 at 759.126 kb on - strand, within GFF1020 at 759.169 kb on + strand, within GFF1020 at 759.170 kb on - strand, within GFF1020 at 759.170 kb on - strand, within GFF1020 at 759.215 kb on + strand, within GFF1020 at 759.216 kb on - strand, within GFF1020 at 759.296 kb on - strand, within GFF1020 at 759.299 kb on + strand, within GFF1020 at 759.300 kb on - strand, within GFF1020 at 759.300 kb on - strand, within GFF1020 at 759.418 kb on + strand, within GFF1020 at 759.418 kb on + strand, within GFF1020 at 759.418 kb on + strand, within GFF1020 at 759.418 kb on + strand, within GFF1020 at 759.510 kb on + strand, within GFF1020 at 759.510 kb on + strand, within GFF1020 at 759.510 kb on + strand, within GFF1020 at 759.510 kb on + strand, within GFF1020 at 759.510 kb on + strand, within GFF1020 at 759.510 kb on + strand, within GFF1020 at 759.510 kb on + strand, within GFF1020 at 759.511 kb on - strand, within GFF1020 at 759.511 kb on - strand, within GFF1020 at 759.511 kb on - strand, within GFF1020 at 759.511 kb on - strand, within GFF1020 at 759.511 kb on - strand, within GFF1020 at 759.511 kb on - strand, within GFF1020 at 759.531 kb on + strand, within GFF1020 at 759.531 kb on + strand, within GFF1020 at 759.531 kb on + strand, within GFF1020 at 759.531 kb on + strand, within GFF1020 at 759.531 kb on + strand, within GFF1020 at 759.532 kb on - strand, within GFF1020 at 759.532 kb on - strand, within GFF1020 at 759.532 kb on - strand, within GFF1020 at 759.532 kb on - strand, within GFF1020 at 759.532 kb on - strand, within GFF1020 at 759.624 kb on + strand at 759.624 kb on + strand at 759.625 kb on - strand at 759.686 kb on + strand at 759.690 kb on + strand at 759.690 kb on + strand at 759.690 kb on + strand at 759.690 kb on + strand at 759.690 kb on + strand at 759.691 kb on - strand at 759.691 kb on - strand at 759.691 kb on - strand at 759.691 kb on - strand at 759.691 kb on - strand at 759.761 kb on + strand at 759.785 kb on + strand at 759.786 kb on - strand at 759.786 kb on - strand at 759.815 kb on + strand at 759.816 kb on - strand at 759.816 kb on - strand at 759.816 kb on - strand at 759.835 kb on + strand at 759.835 kb on + strand at 759.835 kb on + strand at 759.983 kb on + strand at 759.983 kb on + strand at 759.983 kb on + strand at 759.984 kb on - strand at 759.984 kb on - strand at 760.036 kb on + strand, within GFF1021 at 760.036 kb on + strand, within GFF1021 at 760.036 kb on + strand, within GFF1021 at 760.037 kb on - strand, within GFF1021 at 760.037 kb on - strand, within GFF1021 at 760.037 kb on - strand, within GFF1021 at 760.037 kb on - strand, within GFF1021 at 760.037 kb on - strand, within GFF1021 at 760.058 kb on - strand, within GFF1021 at 760.058 kb on - strand, within GFF1021 at 760.117 kb on + strand, within GFF1021 at 760.117 kb on + strand, within GFF1021 at 760.118 kb on - strand, within GFF1021 at 760.164 kb on - strand, within GFF1021 at 760.202 kb on - strand, within GFF1021 at 760.291 kb on + strand at 760.291 kb on + strand at 760.292 kb on - strand at 760.347 kb on - strand at 760.520 kb on + strand, within GFF1022 at 760.521 kb on - strand, within GFF1022
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 1 remove 757,806 + -0.2 757,806 + -0.1 757,806 + +0.0 757,806 + +1.0 757,807 - -0.3 757,888 + -0.1 757,888 + -0.4 757,889 - -0.7 757,889 - +0.1 757,889 - -0.9 757,918 - GFF1019 0.13 +1.1 758,027 + GFF1019 0.27 +0.6 758,027 + GFF1019 0.27 -0.7 758,028 - GFF1019 0.27 -0.5 758,028 - GFF1019 0.27 -0.7 758,028 - GFF1019 0.27 -0.1 758,028 - GFF1019 0.27 -0.0 758,028 - GFF1019 0.27 -0.3 758,039 + GFF1019 0.29 +0.8 758,107 + GFF1019 0.37 +0.0 758,107 + GFF1019 0.37 -0.6 758,107 + GFF1019 0.37 -0.1 758,108 - GFF1019 0.37 +0.6 758,108 - GFF1019 0.37 -0.5 758,509 + GFF1019 0.89 -0.5 758,509 + GFF1019 0.89 +0.9 758,509 + GFF1019 0.89 +0.0 758,509 + GFF1019 0.89 +0.3 758,509 + GFF1019 0.89 +0.2 758,509 + GFF1019 0.89 -0.2 758,509 + GFF1019 0.89 -0.0 758,509 + GFF1019 0.89 +1.0 758,510 - GFF1019 0.89 -0.3 758,510 - GFF1019 0.89 +1.3 758,510 - GFF1019 0.89 -0.1 758,510 - GFF1019 0.89 +0.1 758,510 - GFF1019 0.89 +0.8 758,510 - GFF1019 0.89 -0.7 758,510 - GFF1019 0.89 +0.9 758,510 - GFF1019 0.89 +0.1 758,510 - GFF1019 0.89 +0.0 758,510 - GFF1019 0.89 -1.7 758,510 - GFF1019 0.89 +0.3 758,608 + -0.2 758,608 + +0.1 758,618 + +0.0 758,715 + GFF1020 0.10 -1.2 758,715 + GFF1020 0.10 -0.1 758,716 - GFF1020 0.10 -0.6 758,716 - GFF1020 0.10 -0.1 758,765 + GFF1020 0.15 +0.1 758,905 + GFF1020 0.28 -0.3 758,905 + GFF1020 0.28 -0.2 758,906 - GFF1020 0.28 +0.1 758,906 - GFF1020 0.28 +0.1 758,945 - GFF1020 0.32 +0.1 758,945 - GFF1020 0.32 -1.0 758,988 + GFF1020 0.36 +1.0 759,110 - GFF1020 0.48 +0.2 759,125 + GFF1020 0.49 +0.6 759,125 + GFF1020 0.49 -1.0 759,125 + GFF1020 0.49 +1.1 759,125 + GFF1020 0.49 -0.2 759,126 - GFF1020 0.49 +0.2 759,169 + GFF1020 0.53 -0.3 759,170 - GFF1020 0.53 -0.2 759,170 - GFF1020 0.53 +0.1 759,215 + GFF1020 0.58 +0.4 759,216 - GFF1020 0.58 -0.9 759,296 - GFF1020 0.65 -0.2 759,299 + GFF1020 0.66 +0.6 759,300 - GFF1020 0.66 +0.2 759,300 - GFF1020 0.66 +0.2 759,418 + GFF1020 0.77 +1.1 759,418 + GFF1020 0.77 +0.1 759,418 + GFF1020 0.77 +0.7 759,418 + GFF1020 0.77 -0.7 759,510 + GFF1020 0.86 +0.6 759,510 + GFF1020 0.86 +0.0 759,510 + GFF1020 0.86 -0.5 759,510 + GFF1020 0.86 -0.1 759,510 + GFF1020 0.86 -0.7 759,510 + GFF1020 0.86 -0.1 759,510 + GFF1020 0.86 -1.5 759,511 - GFF1020 0.86 +0.2 759,511 - GFF1020 0.86 +1.2 759,511 - GFF1020 0.86 +1.5 759,511 - GFF1020 0.86 +2.2 759,511 - GFF1020 0.86 -0.4 759,511 - GFF1020 0.86 +0.5 759,531 + GFF1020 0.88 -0.1 759,531 + GFF1020 0.88 +0.4 759,531 + GFF1020 0.88 -0.5 759,531 + GFF1020 0.88 -1.0 759,531 + GFF1020 0.88 +0.3 759,532 - GFF1020 0.88 +0.2 759,532 - GFF1020 0.88 -1.0 759,532 - GFF1020 0.88 +0.3 759,532 - GFF1020 0.88 -1.4 759,532 - GFF1020 0.88 -0.2 759,624 + -0.7 759,624 + -0.3 759,625 - +0.3 759,686 + +0.9 759,690 + +0.7 759,690 + -1.8 759,690 + +0.7 759,690 + +0.5 759,690 + -0.0 759,691 - +0.3 759,691 - -0.4 759,691 - -1.5 759,691 - -0.7 759,691 - +0.1 759,761 + +0.2 759,785 + -0.6 759,786 - +0.5 759,786 - -0.2 759,815 + -0.1 759,816 - -1.4 759,816 - -0.3 759,816 - -0.8 759,835 + +0.0 759,835 + +0.4 759,835 + +0.8 759,983 + -0.4 759,983 + +0.1 759,983 + +0.7 759,984 - -0.7 759,984 - -0.5 760,036 + GFF1021 0.25 +0.1 760,036 + GFF1021 0.25 +0.5 760,036 + GFF1021 0.25 +0.2 760,037 - GFF1021 0.25 +0.0 760,037 - GFF1021 0.25 -0.1 760,037 - GFF1021 0.25 -0.1 760,037 - GFF1021 0.25 +0.5 760,037 - GFF1021 0.25 +0.2 760,058 - GFF1021 0.32 +0.1 760,058 - GFF1021 0.32 +1.2 760,117 + GFF1021 0.50 +0.9 760,117 + GFF1021 0.50 -0.5 760,118 - GFF1021 0.51 -0.9 760,164 - GFF1021 0.65 +0.1 760,202 - GFF1021 0.77 -0.1 760,291 + +0.2 760,291 + -0.2 760,292 - -0.3 760,347 - +0.6 760,520 + GFF1022 0.21 -0.1 760,521 - GFF1022 0.21 +1.1
Or see this region's nucleotide sequence