Experiment: Polygalacturonic 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04964 and BACOVA_04965 are separated by 21 nucleotides BACOVA_04965 and BACOVA_04966 are separated by 80 nucleotides
BACOVA_04964: BACOVA_04964 - TonB-linked outer membrane protein, SusC/RagA family, at 403,919 to 406,969
_04964
BACOVA_04965: BACOVA_04965 - SusD family protein, at 406,991 to 408,712
_04965
BACOVA_04966: BACOVA_04966 - FG-GAP repeat protein, at 408,793 to 410,877
_04966
Position (kb) 406
407
408
409 Strain fitness (log2 ratio) -2
-1
0
1
2 at 406.067 kb on + strand, within BACOVA_04964 at 406.068 kb on - strand, within BACOVA_04964 at 406.087 kb on + strand, within BACOVA_04964 at 406.088 kb on - strand, within BACOVA_04964 at 406.170 kb on - strand, within BACOVA_04964 at 406.190 kb on - strand, within BACOVA_04964 at 406.216 kb on - strand, within BACOVA_04964 at 406.249 kb on + strand, within BACOVA_04964 at 406.250 kb on - strand, within BACOVA_04964 at 406.250 kb on - strand, within BACOVA_04964 at 406.291 kb on + strand, within BACOVA_04964 at 406.292 kb on - strand, within BACOVA_04964 at 406.329 kb on + strand, within BACOVA_04964 at 406.329 kb on + strand, within BACOVA_04964 at 406.330 kb on - strand, within BACOVA_04964 at 406.330 kb on - strand, within BACOVA_04964 at 406.330 kb on - strand, within BACOVA_04964 at 406.332 kb on - strand, within BACOVA_04964 at 406.342 kb on - strand, within BACOVA_04964 at 406.373 kb on - strand, within BACOVA_04964 at 406.402 kb on + strand, within BACOVA_04964 at 406.486 kb on + strand, within BACOVA_04964 at 406.486 kb on + strand, within BACOVA_04964 at 406.486 kb on + strand, within BACOVA_04964 at 406.551 kb on + strand, within BACOVA_04964 at 406.552 kb on - strand, within BACOVA_04964 at 406.557 kb on + strand, within BACOVA_04964 at 406.557 kb on + strand, within BACOVA_04964 at 406.558 kb on - strand, within BACOVA_04964 at 406.558 kb on - strand, within BACOVA_04964 at 406.607 kb on - strand, within BACOVA_04964 at 406.624 kb on - strand, within BACOVA_04964 at 406.624 kb on - strand, within BACOVA_04964 at 406.628 kb on - strand, within BACOVA_04964 at 406.652 kb on + strand, within BACOVA_04964 at 406.652 kb on + strand, within BACOVA_04964 at 406.692 kb on - strand at 406.715 kb on - strand at 406.724 kb on - strand at 406.790 kb on + strand at 406.790 kb on + strand at 406.791 kb on - strand at 406.791 kb on - strand at 406.848 kb on + strand at 406.851 kb on - strand at 406.851 kb on - strand at 406.851 kb on - strand at 406.910 kb on + strand at 406.941 kb on + strand at 406.942 kb on - strand at 406.944 kb on + strand at 407.008 kb on + strand at 407.012 kb on + strand at 407.072 kb on + strand at 407.073 kb on - strand at 407.078 kb on - strand at 407.078 kb on - strand at 407.081 kb on + strand at 407.118 kb on + strand at 407.119 kb on - strand at 407.137 kb on + strand at 407.141 kb on + strand at 407.142 kb on - strand at 407.172 kb on - strand, within BACOVA_04965 at 407.172 kb on - strand, within BACOVA_04965 at 407.172 kb on - strand, within BACOVA_04965 at 407.174 kb on - strand, within BACOVA_04965 at 407.214 kb on - strand, within BACOVA_04965 at 407.214 kb on - strand, within BACOVA_04965 at 407.219 kb on + strand, within BACOVA_04965 at 407.220 kb on - strand, within BACOVA_04965 at 407.276 kb on - strand, within BACOVA_04965 at 407.300 kb on + strand, within BACOVA_04965 at 407.311 kb on - strand, within BACOVA_04965 at 407.326 kb on - strand, within BACOVA_04965 at 407.327 kb on + strand, within BACOVA_04965 at 407.382 kb on - strand, within BACOVA_04965 at 407.405 kb on - strand, within BACOVA_04965 at 407.417 kb on + strand, within BACOVA_04965 at 407.424 kb on + strand, within BACOVA_04965 at 407.424 kb on + strand, within BACOVA_04965 at 407.441 kb on + strand, within BACOVA_04965 at 407.441 kb on + strand, within BACOVA_04965 at 407.442 kb on - strand, within BACOVA_04965 at 407.448 kb on - strand, within BACOVA_04965 at 407.452 kb on + strand, within BACOVA_04965 at 407.453 kb on - strand, within BACOVA_04965 at 407.468 kb on + strand, within BACOVA_04965 at 407.494 kb on + strand, within BACOVA_04965 at 407.496 kb on + strand, within BACOVA_04965 at 407.497 kb on - strand, within BACOVA_04965 at 407.497 kb on - strand, within BACOVA_04965 at 407.500 kb on - strand, within BACOVA_04965 at 407.518 kb on + strand, within BACOVA_04965 at 407.519 kb on - strand, within BACOVA_04965 at 407.556 kb on - strand, within BACOVA_04965 at 407.557 kb on + strand, within BACOVA_04965 at 407.582 kb on - strand, within BACOVA_04965 at 407.582 kb on - strand, within BACOVA_04965 at 407.588 kb on - strand, within BACOVA_04965 at 407.620 kb on + strand, within BACOVA_04965 at 407.621 kb on - strand, within BACOVA_04965 at 407.633 kb on - strand, within BACOVA_04965 at 407.636 kb on - strand, within BACOVA_04965 at 407.702 kb on + strand, within BACOVA_04965 at 407.718 kb on + strand, within BACOVA_04965 at 407.735 kb on - strand, within BACOVA_04965 at 407.738 kb on - strand, within BACOVA_04965 at 407.761 kb on + strand, within BACOVA_04965 at 407.771 kb on - strand, within BACOVA_04965 at 407.831 kb on + strand, within BACOVA_04965 at 407.858 kb on + strand, within BACOVA_04965 at 407.903 kb on - strand, within BACOVA_04965 at 407.905 kb on + strand, within BACOVA_04965 at 407.929 kb on + strand, within BACOVA_04965 at 407.929 kb on + strand, within BACOVA_04965 at 408.038 kb on - strand, within BACOVA_04965 at 408.042 kb on - strand, within BACOVA_04965 at 408.042 kb on - strand, within BACOVA_04965 at 408.062 kb on + strand, within BACOVA_04965 at 408.064 kb on + strand, within BACOVA_04965 at 408.125 kb on - strand, within BACOVA_04965 at 408.125 kb on - strand, within BACOVA_04965 at 408.134 kb on - strand, within BACOVA_04965 at 408.134 kb on - strand, within BACOVA_04965 at 408.134 kb on - strand, within BACOVA_04965 at 408.153 kb on - strand, within BACOVA_04965 at 408.219 kb on - strand, within BACOVA_04965 at 408.240 kb on + strand, within BACOVA_04965 at 408.241 kb on - strand, within BACOVA_04965 at 408.302 kb on + strand, within BACOVA_04965 at 408.326 kb on + strand, within BACOVA_04965 at 408.327 kb on - strand, within BACOVA_04965 at 408.328 kb on + strand, within BACOVA_04965 at 408.328 kb on + strand, within BACOVA_04965 at 408.329 kb on - strand, within BACOVA_04965 at 408.397 kb on - strand, within BACOVA_04965 at 408.478 kb on + strand, within BACOVA_04965 at 408.483 kb on + strand, within BACOVA_04965 at 408.520 kb on - strand, within BACOVA_04965 at 408.575 kb on - strand at 408.592 kb on + strand at 408.592 kb on + strand at 408.596 kb on + strand at 408.596 kb on + strand at 408.597 kb on - strand at 408.597 kb on - strand at 408.599 kb on - strand at 408.599 kb on - strand at 408.603 kb on - strand at 408.603 kb on - strand at 408.637 kb on + strand at 408.637 kb on + strand at 408.637 kb on + strand at 408.638 kb on - strand at 408.638 kb on - strand at 408.644 kb on + strand at 408.737 kb on - strand at 408.737 kb on - strand at 408.737 kb on - strand at 408.743 kb on - strand at 408.747 kb on + strand at 408.747 kb on + strand at 408.805 kb on + strand at 408.806 kb on - strand at 408.807 kb on + strand at 408.807 kb on + strand at 408.809 kb on + strand at 408.809 kb on + strand at 408.810 kb on - strand at 408.839 kb on + strand at 408.954 kb on + strand at 408.958 kb on + strand at 409.028 kb on + strand, within BACOVA_04966 at 409.047 kb on + strand, within BACOVA_04966 at 409.066 kb on + strand, within BACOVA_04966 at 409.067 kb on - strand, within BACOVA_04966 at 409.067 kb on - strand, within BACOVA_04966 at 409.069 kb on - strand, within BACOVA_04966 at 409.126 kb on - strand, within BACOVA_04966 at 409.126 kb on - strand, within BACOVA_04966 at 409.154 kb on + strand, within BACOVA_04966 at 409.169 kb on + strand, within BACOVA_04966 at 409.170 kb on - strand, within BACOVA_04966 at 409.215 kb on + strand, within BACOVA_04966 at 409.215 kb on + strand, within BACOVA_04966 at 409.221 kb on + strand, within BACOVA_04966 at 409.247 kb on - strand, within BACOVA_04966 at 409.257 kb on + strand, within BACOVA_04966 at 409.258 kb on - strand, within BACOVA_04966 at 409.262 kb on + strand, within BACOVA_04966 at 409.291 kb on - strand, within BACOVA_04966 at 409.295 kb on - strand, within BACOVA_04966 at 409.309 kb on - strand, within BACOVA_04966 at 409.370 kb on - strand, within BACOVA_04966 at 409.470 kb on + strand, within BACOVA_04966 at 409.490 kb on - strand, within BACOVA_04966 at 409.491 kb on + strand, within BACOVA_04966 at 409.500 kb on + strand, within BACOVA_04966 at 409.501 kb on - strand, within BACOVA_04966 at 409.506 kb on - strand, within BACOVA_04966 at 409.530 kb on - strand, within BACOVA_04966 at 409.538 kb on + strand, within BACOVA_04966 at 409.578 kb on + strand, within BACOVA_04966 at 409.588 kb on - strand, within BACOVA_04966 at 409.597 kb on + strand, within BACOVA_04966 at 409.597 kb on + strand, within BACOVA_04966 at 409.597 kb on + strand, within BACOVA_04966 at 409.662 kb on + strand, within BACOVA_04966 at 409.662 kb on + strand, within BACOVA_04966 at 409.668 kb on + strand, within BACOVA_04966 at 409.702 kb on + strand, within BACOVA_04966 at 409.703 kb on - strand, within BACOVA_04966 at 409.711 kb on - strand, within BACOVA_04966 at 409.711 kb on - strand, within BACOVA_04966
Per-strain Table
Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C) remove 406,067 + BACOVA_04964 0.70 -0.7 406,068 - BACOVA_04964 0.70 -0.5 406,087 + BACOVA_04964 0.71 -0.3 406,088 - BACOVA_04964 0.71 -0.5 406,170 - BACOVA_04964 0.74 +0.6 406,190 - BACOVA_04964 0.74 -0.3 406,216 - BACOVA_04964 0.75 +0.1 406,249 + BACOVA_04964 0.76 +0.4 406,250 - BACOVA_04964 0.76 -1.3 406,250 - BACOVA_04964 0.76 -2.2 406,291 + BACOVA_04964 0.78 -0.6 406,292 - BACOVA_04964 0.78 -0.1 406,329 + BACOVA_04964 0.79 -1.6 406,329 + BACOVA_04964 0.79 +0.1 406,330 - BACOVA_04964 0.79 +1.3 406,330 - BACOVA_04964 0.79 -0.5 406,330 - BACOVA_04964 0.79 -0.3 406,332 - BACOVA_04964 0.79 -0.8 406,342 - BACOVA_04964 0.79 -0.2 406,373 - BACOVA_04964 0.80 +0.1 406,402 + BACOVA_04964 0.81 -0.5 406,486 + BACOVA_04964 0.84 +1.0 406,486 + BACOVA_04964 0.84 -0.8 406,486 + BACOVA_04964 0.84 +0.7 406,551 + BACOVA_04964 0.86 -0.6 406,552 - BACOVA_04964 0.86 +0.1 406,557 + BACOVA_04964 0.86 -0.5 406,557 + BACOVA_04964 0.86 -0.2 406,558 - BACOVA_04964 0.86 -1.4 406,558 - BACOVA_04964 0.86 +0.4 406,607 - BACOVA_04964 0.88 -0.4 406,624 - BACOVA_04964 0.89 +1.5 406,624 - BACOVA_04964 0.89 -0.8 406,628 - BACOVA_04964 0.89 +0.2 406,652 + BACOVA_04964 0.90 +0.3 406,652 + BACOVA_04964 0.90 -1.6 406,692 - -0.1 406,715 - +0.2 406,724 - -0.7 406,790 + +0.5 406,790 + -0.4 406,791 - +0.5 406,791 - -1.0 406,848 + +0.8 406,851 - -0.4 406,851 - -0.9 406,851 - -0.6 406,910 + -0.7 406,941 + -0.7 406,942 - +0.3 406,944 + -0.7 407,008 + +0.7 407,012 + -0.9 407,072 + -1.5 407,073 - +0.7 407,078 - +0.6 407,078 - -0.5 407,081 + -1.2 407,118 + -1.0 407,119 - -0.3 407,137 + +0.3 407,141 + +0.9 407,142 - -0.7 407,172 - BACOVA_04965 0.11 -0.8 407,172 - BACOVA_04965 0.11 -0.3 407,172 - BACOVA_04965 0.11 -1.2 407,174 - BACOVA_04965 0.11 +0.8 407,214 - BACOVA_04965 0.13 -1.2 407,214 - BACOVA_04965 0.13 +0.1 407,219 + BACOVA_04965 0.13 -0.1 407,220 - BACOVA_04965 0.13 -0.4 407,276 - BACOVA_04965 0.17 +0.1 407,300 + BACOVA_04965 0.18 -1.9 407,311 - BACOVA_04965 0.19 -1.7 407,326 - BACOVA_04965 0.19 -0.9 407,327 + BACOVA_04965 0.20 +0.1 407,382 - BACOVA_04965 0.23 -0.7 407,405 - BACOVA_04965 0.24 -0.8 407,417 + BACOVA_04965 0.25 +0.1 407,424 + BACOVA_04965 0.25 -0.4 407,424 + BACOVA_04965 0.25 +0.0 407,441 + BACOVA_04965 0.26 -0.7 407,441 + BACOVA_04965 0.26 -1.0 407,442 - BACOVA_04965 0.26 +0.0 407,448 - BACOVA_04965 0.27 -0.8 407,452 + BACOVA_04965 0.27 -0.8 407,453 - BACOVA_04965 0.27 -0.5 407,468 + BACOVA_04965 0.28 -0.5 407,494 + BACOVA_04965 0.29 +0.3 407,496 + BACOVA_04965 0.29 -0.2 407,497 - BACOVA_04965 0.29 +0.5 407,497 - BACOVA_04965 0.29 -1.6 407,500 - BACOVA_04965 0.30 +2.7 407,518 + BACOVA_04965 0.31 -0.1 407,519 - BACOVA_04965 0.31 +0.3 407,556 - BACOVA_04965 0.33 +0.3 407,557 + BACOVA_04965 0.33 -0.3 407,582 - BACOVA_04965 0.34 +0.3 407,582 - BACOVA_04965 0.34 +0.8 407,588 - BACOVA_04965 0.35 -0.3 407,620 + BACOVA_04965 0.37 +0.5 407,621 - BACOVA_04965 0.37 +0.8 407,633 - BACOVA_04965 0.37 -0.6 407,636 - BACOVA_04965 0.37 -0.0 407,702 + BACOVA_04965 0.41 -1.1 407,718 + BACOVA_04965 0.42 +1.0 407,735 - BACOVA_04965 0.43 +0.2 407,738 - BACOVA_04965 0.43 -0.2 407,761 + BACOVA_04965 0.45 +0.8 407,771 - BACOVA_04965 0.45 -0.4 407,831 + BACOVA_04965 0.49 -2.2 407,858 + BACOVA_04965 0.50 +0.1 407,903 - BACOVA_04965 0.53 +0.2 407,905 + BACOVA_04965 0.53 -1.2 407,929 + BACOVA_04965 0.54 -0.5 407,929 + BACOVA_04965 0.54 +0.2 408,038 - BACOVA_04965 0.61 -0.7 408,042 - BACOVA_04965 0.61 +0.5 408,042 - BACOVA_04965 0.61 -0.5 408,062 + BACOVA_04965 0.62 -0.5 408,064 + BACOVA_04965 0.62 -1.3 408,125 - BACOVA_04965 0.66 -0.9 408,125 - BACOVA_04965 0.66 -0.5 408,134 - BACOVA_04965 0.66 +0.4 408,134 - BACOVA_04965 0.66 -0.7 408,134 - BACOVA_04965 0.66 +0.8 408,153 - BACOVA_04965 0.67 +1.0 408,219 - BACOVA_04965 0.71 +1.3 408,240 + BACOVA_04965 0.73 -0.3 408,241 - BACOVA_04965 0.73 -0.9 408,302 + BACOVA_04965 0.76 -0.6 408,326 + BACOVA_04965 0.78 +0.5 408,327 - BACOVA_04965 0.78 -1.1 408,328 + BACOVA_04965 0.78 -1.8 408,328 + BACOVA_04965 0.78 -0.1 408,329 - BACOVA_04965 0.78 +0.5 408,397 - BACOVA_04965 0.82 -0.6 408,478 + BACOVA_04965 0.86 +0.0 408,483 + BACOVA_04965 0.87 -1.2 408,520 - BACOVA_04965 0.89 -0.7 408,575 - -0.5 408,592 + -1.9 408,592 + +0.6 408,596 + -0.8 408,596 + -0.6 408,597 - -1.0 408,597 - +0.4 408,599 - +0.1 408,599 - -0.6 408,603 - +0.7 408,603 - -0.9 408,637 + +0.1 408,637 + +0.3 408,637 + -0.6 408,638 - -0.5 408,638 - -1.3 408,644 + +0.0 408,737 - +0.5 408,737 - +0.0 408,737 - +0.2 408,743 - +1.0 408,747 + -0.3 408,747 + -0.0 408,805 + -0.4 408,806 - -1.0 408,807 + -0.8 408,807 + +0.9 408,809 + +0.8 408,809 + +0.0 408,810 - +0.0 408,839 + +0.4 408,954 + -0.4 408,958 + -0.5 409,028 + BACOVA_04966 0.11 -0.7 409,047 + BACOVA_04966 0.12 -0.3 409,066 + BACOVA_04966 0.13 -1.5 409,067 - BACOVA_04966 0.13 -1.2 409,067 - BACOVA_04966 0.13 +0.5 409,069 - BACOVA_04966 0.13 -1.0 409,126 - BACOVA_04966 0.16 +1.9 409,126 - BACOVA_04966 0.16 -0.9 409,154 + BACOVA_04966 0.17 -0.5 409,169 + BACOVA_04966 0.18 -0.1 409,170 - BACOVA_04966 0.18 -0.8 409,215 + BACOVA_04966 0.20 +1.4 409,215 + BACOVA_04966 0.20 +0.3 409,221 + BACOVA_04966 0.21 -2.1 409,247 - BACOVA_04966 0.22 -0.4 409,257 + BACOVA_04966 0.22 -0.2 409,258 - BACOVA_04966 0.22 -0.1 409,262 + BACOVA_04966 0.22 +0.1 409,291 - BACOVA_04966 0.24 -0.5 409,295 - BACOVA_04966 0.24 -0.4 409,309 - BACOVA_04966 0.25 +1.0 409,370 - BACOVA_04966 0.28 -0.7 409,470 + BACOVA_04966 0.32 -2.0 409,490 - BACOVA_04966 0.33 -0.3 409,491 + BACOVA_04966 0.33 -0.6 409,500 + BACOVA_04966 0.34 +0.4 409,501 - BACOVA_04966 0.34 -0.6 409,506 - BACOVA_04966 0.34 -0.9 409,530 - BACOVA_04966 0.35 -0.2 409,538 + BACOVA_04966 0.36 +0.4 409,578 + BACOVA_04966 0.38 -1.2 409,588 - BACOVA_04966 0.38 +0.8 409,597 + BACOVA_04966 0.39 +0.1 409,597 + BACOVA_04966 0.39 +0.5 409,597 + BACOVA_04966 0.39 +0.1 409,662 + BACOVA_04966 0.42 -0.5 409,662 + BACOVA_04966 0.42 +0.6 409,668 + BACOVA_04966 0.42 +0.8 409,702 + BACOVA_04966 0.44 -0.6 409,703 - BACOVA_04966 0.44 -0.8 409,711 - BACOVA_04966 0.44 -0.1 409,711 - BACOVA_04966 0.44 -0.4
Or see this region's nucleotide sequence