Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04355

Experiment: Polygalacturonic 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04354 and BACOVA_04355 overlap by 20 nucleotidesBACOVA_04355 and BACOVA_04356 are separated by 295 nucleotides BACOVA_04354: BACOVA_04354 - Xaa-His dipeptidase, at 240,638 to 242,098 _04354 BACOVA_04355: BACOVA_04355 - endonuclease/exonuclease/phosphatase family protein, at 242,079 to 243,278 _04355 BACOVA_04356: BACOVA_04356 - transporter, small conductance mechanosensitive ion channel MscS family protein, at 243,574 to 244,851 _04356 Position (kb) 242 243 244Strain fitness (log2 ratio) -2 -1 0 1 2at 241.183 kb on + strand, within BACOVA_04354at 241.184 kb on - strand, within BACOVA_04354at 241.210 kb on + strand, within BACOVA_04354at 241.323 kb on + strand, within BACOVA_04354at 241.367 kb on + strand, within BACOVA_04354at 241.405 kb on + strand, within BACOVA_04354at 241.478 kb on - strand, within BACOVA_04354at 241.506 kb on + strand, within BACOVA_04354at 241.507 kb on - strand, within BACOVA_04354at 241.515 kb on + strand, within BACOVA_04354at 241.564 kb on - strand, within BACOVA_04354at 241.567 kb on + strand, within BACOVA_04354at 241.568 kb on - strand, within BACOVA_04354at 241.568 kb on - strand, within BACOVA_04354at 241.596 kb on + strand, within BACOVA_04354at 241.626 kb on + strand, within BACOVA_04354at 241.626 kb on + strand, within BACOVA_04354at 241.627 kb on - strand, within BACOVA_04354at 241.627 kb on - strand, within BACOVA_04354at 241.628 kb on + strand, within BACOVA_04354at 241.629 kb on - strand, within BACOVA_04354at 241.629 kb on - strand, within BACOVA_04354at 241.706 kb on - strand, within BACOVA_04354at 241.741 kb on - strand, within BACOVA_04354at 241.807 kb on + strand, within BACOVA_04354at 241.807 kb on + strand, within BACOVA_04354at 241.881 kb on - strand, within BACOVA_04354at 241.912 kb on + strand, within BACOVA_04354at 241.913 kb on - strand, within BACOVA_04354at 241.959 kb on - strandat 242.030 kb on - strandat 242.035 kb on + strandat 242.082 kb on + strandat 242.127 kb on + strandat 242.127 kb on + strandat 242.127 kb on + strandat 242.127 kb on + strandat 242.128 kb on - strandat 242.128 kb on - strandat 242.150 kb on - strandat 242.162 kb on - strandat 242.179 kb on + strandat 242.180 kb on - strandat 242.180 kb on - strandat 242.192 kb on - strandat 242.293 kb on + strand, within BACOVA_04355at 242.360 kb on - strand, within BACOVA_04355at 242.374 kb on - strand, within BACOVA_04355at 242.382 kb on + strand, within BACOVA_04355at 242.382 kb on + strand, within BACOVA_04355at 242.383 kb on - strand, within BACOVA_04355at 242.413 kb on + strand, within BACOVA_04355at 242.417 kb on + strand, within BACOVA_04355at 242.417 kb on + strand, within BACOVA_04355at 242.418 kb on - strand, within BACOVA_04355at 242.423 kb on + strand, within BACOVA_04355at 242.424 kb on - strand, within BACOVA_04355at 242.450 kb on - strand, within BACOVA_04355at 242.459 kb on - strand, within BACOVA_04355at 242.512 kb on + strand, within BACOVA_04355at 242.526 kb on + strand, within BACOVA_04355at 242.686 kb on + strand, within BACOVA_04355at 242.699 kb on + strand, within BACOVA_04355at 242.700 kb on - strand, within BACOVA_04355at 242.711 kb on - strand, within BACOVA_04355at 242.764 kb on - strand, within BACOVA_04355at 242.770 kb on + strand, within BACOVA_04355at 242.770 kb on + strand, within BACOVA_04355at 242.772 kb on + strand, within BACOVA_04355at 242.772 kb on + strand, within BACOVA_04355at 242.773 kb on - strand, within BACOVA_04355at 242.773 kb on - strand, within BACOVA_04355at 242.786 kb on - strand, within BACOVA_04355at 242.817 kb on - strand, within BACOVA_04355at 242.929 kb on + strand, within BACOVA_04355at 242.967 kb on - strand, within BACOVA_04355at 242.986 kb on + strand, within BACOVA_04355at 242.987 kb on - strand, within BACOVA_04355at 242.987 kb on - strand, within BACOVA_04355at 242.988 kb on + strand, within BACOVA_04355at 242.996 kb on - strand, within BACOVA_04355at 243.091 kb on + strand, within BACOVA_04355at 243.091 kb on + strand, within BACOVA_04355at 243.091 kb on + strand, within BACOVA_04355at 243.092 kb on - strand, within BACOVA_04355at 243.116 kb on + strand, within BACOVA_04355at 243.216 kb on + strandat 243.217 kb on - strandat 243.249 kb on + strandat 243.272 kb on - strandat 243.274 kb on - strandat 243.276 kb on + strandat 243.277 kb on - strandat 243.277 kb on - strandat 243.280 kb on + strandat 243.281 kb on - strandat 243.281 kb on - strandat 243.292 kb on + strandat 243.295 kb on + strandat 243.295 kb on + strandat 243.306 kb on - strandat 243.316 kb on + strandat 243.323 kb on - strandat 243.327 kb on - strandat 243.329 kb on - strandat 243.363 kb on - strandat 243.394 kb on + strandat 243.409 kb on + strandat 243.409 kb on + strandat 243.440 kb on + strandat 243.462 kb on + strandat 243.482 kb on + strandat 243.483 kb on - strandat 243.485 kb on - strandat 243.485 kb on - strandat 243.498 kb on - strandat 243.498 kb on - strandat 243.511 kb on - strandat 243.515 kb on + strandat 243.556 kb on + strandat 243.575 kb on + strandat 243.575 kb on + strandat 243.660 kb on - strandat 243.676 kb on - strandat 243.703 kb on - strand, within BACOVA_04356at 243.703 kb on - strand, within BACOVA_04356at 243.706 kb on + strand, within BACOVA_04356at 243.707 kb on - strand, within BACOVA_04356at 243.713 kb on + strand, within BACOVA_04356at 243.713 kb on + strand, within BACOVA_04356at 243.721 kb on - strand, within BACOVA_04356at 243.782 kb on + strand, within BACOVA_04356at 243.792 kb on + strand, within BACOVA_04356at 243.792 kb on + strand, within BACOVA_04356at 243.793 kb on - strand, within BACOVA_04356at 243.795 kb on - strand, within BACOVA_04356at 243.795 kb on - strand, within BACOVA_04356at 243.797 kb on - strand, within BACOVA_04356at 243.797 kb on - strand, within BACOVA_04356at 243.803 kb on + strand, within BACOVA_04356at 243.803 kb on + strand, within BACOVA_04356at 243.846 kb on - strand, within BACOVA_04356at 243.857 kb on - strand, within BACOVA_04356at 243.912 kb on + strand, within BACOVA_04356at 243.930 kb on + strand, within BACOVA_04356at 244.002 kb on + strand, within BACOVA_04356at 244.002 kb on + strand, within BACOVA_04356at 244.003 kb on - strand, within BACOVA_04356at 244.003 kb on - strand, within BACOVA_04356at 244.003 kb on - strand, within BACOVA_04356at 244.005 kb on - strand, within BACOVA_04356at 244.027 kb on - strand, within BACOVA_04356at 244.128 kb on + strand, within BACOVA_04356at 244.128 kb on + strand, within BACOVA_04356at 244.168 kb on + strand, within BACOVA_04356at 244.169 kb on - strand, within BACOVA_04356at 244.183 kb on + strand, within BACOVA_04356at 244.187 kb on - strand, within BACOVA_04356at 244.192 kb on + strand, within BACOVA_04356at 244.193 kb on - strand, within BACOVA_04356at 244.193 kb on - strand, within BACOVA_04356at 244.254 kb on + strand, within BACOVA_04356at 244.255 kb on - strand, within BACOVA_04356at 244.265 kb on - strand, within BACOVA_04356at 244.265 kb on - strand, within BACOVA_04356

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Per-strain Table

Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C)
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241,183 + BACOVA_04354 0.37 -1.2
241,184 - BACOVA_04354 0.37 -0.9
241,210 + BACOVA_04354 0.39 -0.8
241,323 + BACOVA_04354 0.47 -0.6
241,367 + BACOVA_04354 0.50 -0.2
241,405 + BACOVA_04354 0.52 +0.4
241,478 - BACOVA_04354 0.57 -1.0
241,506 + BACOVA_04354 0.59 -1.3
241,507 - BACOVA_04354 0.59 -1.6
241,515 + BACOVA_04354 0.60 -0.0
241,564 - BACOVA_04354 0.63 -0.7
241,567 + BACOVA_04354 0.64 -0.9
241,568 - BACOVA_04354 0.64 +0.1
241,568 - BACOVA_04354 0.64 -1.0
241,596 + BACOVA_04354 0.66 -2.6
241,626 + BACOVA_04354 0.68 -0.5
241,626 + BACOVA_04354 0.68 +0.2
241,627 - BACOVA_04354 0.68 -2.7
241,627 - BACOVA_04354 0.68 -2.4
241,628 + BACOVA_04354 0.68 -0.1
241,629 - BACOVA_04354 0.68 +1.2
241,629 - BACOVA_04354 0.68 -1.0
241,706 - BACOVA_04354 0.73 -0.8
241,741 - BACOVA_04354 0.75 -1.0
241,807 + BACOVA_04354 0.80 -0.2
241,807 + BACOVA_04354 0.80 -0.2
241,881 - BACOVA_04354 0.85 -0.0
241,912 + BACOVA_04354 0.87 +0.4
241,913 - BACOVA_04354 0.87 -1.3
241,959 - -1.0
242,030 - -0.0
242,035 + +1.0
242,082 + -0.3
242,127 + -0.6
242,127 + +0.6
242,127 + +0.1
242,127 + +0.2
242,128 - +0.2
242,128 - +0.7
242,150 - +0.7
242,162 - -0.4
242,179 + +0.3
242,180 - -0.4
242,180 - -1.7
242,192 - -0.8
242,293 + BACOVA_04355 0.18 -0.2
242,360 - BACOVA_04355 0.23 +0.4
242,374 - BACOVA_04355 0.25 -0.5
242,382 + BACOVA_04355 0.25 +0.0
242,382 + BACOVA_04355 0.25 +0.2
242,383 - BACOVA_04355 0.25 +0.7
242,413 + BACOVA_04355 0.28 -0.0
242,417 + BACOVA_04355 0.28 -0.1
242,417 + BACOVA_04355 0.28 +1.7
242,418 - BACOVA_04355 0.28 +0.1
242,423 + BACOVA_04355 0.29 +0.7
242,424 - BACOVA_04355 0.29 -0.0
242,450 - BACOVA_04355 0.31 -0.9
242,459 - BACOVA_04355 0.32 +0.4
242,512 + BACOVA_04355 0.36 -0.9
242,526 + BACOVA_04355 0.37 +0.1
242,686 + BACOVA_04355 0.51 +0.1
242,699 + BACOVA_04355 0.52 +0.4
242,700 - BACOVA_04355 0.52 +0.4
242,711 - BACOVA_04355 0.53 -0.8
242,764 - BACOVA_04355 0.57 +0.0
242,770 + BACOVA_04355 0.58 +0.4
242,770 + BACOVA_04355 0.58 -0.1
242,772 + BACOVA_04355 0.58 +0.5
242,772 + BACOVA_04355 0.58 +1.4
242,773 - BACOVA_04355 0.58 -1.7
242,773 - BACOVA_04355 0.58 +0.5
242,786 - BACOVA_04355 0.59 -0.8
242,817 - BACOVA_04355 0.61 +0.6
242,929 + BACOVA_04355 0.71 +0.8
242,967 - BACOVA_04355 0.74 +0.4
242,986 + BACOVA_04355 0.76 +0.0
242,987 - BACOVA_04355 0.76 -0.9
242,987 - BACOVA_04355 0.76 +1.7
242,988 + BACOVA_04355 0.76 +1.0
242,996 - BACOVA_04355 0.76 +0.0
243,091 + BACOVA_04355 0.84 -0.1
243,091 + BACOVA_04355 0.84 -0.9
243,091 + BACOVA_04355 0.84 +0.3
243,092 - BACOVA_04355 0.84 +0.9
243,116 + BACOVA_04355 0.86 -0.6
243,216 + +0.2
243,217 - +1.2
243,249 + -0.4
243,272 - -0.7
243,274 - +0.5
243,276 + +2.4
243,277 - -0.9
243,277 - -0.0
243,280 + -0.6
243,281 - -0.8
243,281 - +0.5
243,292 + -0.2
243,295 + -0.1
243,295 + +1.6
243,306 - -1.4
243,316 + +0.4
243,323 - -0.0
243,327 - +1.3
243,329 - +0.3
243,363 - -0.2
243,394 + -1.4
243,409 + -0.4
243,409 + +0.0
243,440 + -0.3
243,462 + -0.4
243,482 + +0.3
243,483 - -0.8
243,485 - +0.5
243,485 - -0.4
243,498 - +0.5
243,498 - -0.9
243,511 - +0.4
243,515 + -1.2
243,556 + -0.9
243,575 + +0.7
243,575 + -0.8
243,660 - +0.5
243,676 - +0.3
243,703 - BACOVA_04356 0.10 -1.4
243,703 - BACOVA_04356 0.10 +1.3
243,706 + BACOVA_04356 0.10 +1.1
243,707 - BACOVA_04356 0.10 -0.7
243,713 + BACOVA_04356 0.11 -0.8
243,713 + BACOVA_04356 0.11 +0.4
243,721 - BACOVA_04356 0.12 -0.6
243,782 + BACOVA_04356 0.16 -0.1
243,792 + BACOVA_04356 0.17 -1.8
243,792 + BACOVA_04356 0.17 -0.0
243,793 - BACOVA_04356 0.17 +0.2
243,795 - BACOVA_04356 0.17 -1.8
243,795 - BACOVA_04356 0.17 -0.8
243,797 - BACOVA_04356 0.17 -0.4
243,797 - BACOVA_04356 0.17 +0.6
243,803 + BACOVA_04356 0.18 +0.7
243,803 + BACOVA_04356 0.18 -0.0
243,846 - BACOVA_04356 0.21 +1.0
243,857 - BACOVA_04356 0.22 +0.0
243,912 + BACOVA_04356 0.26 +1.1
243,930 + BACOVA_04356 0.28 +0.8
244,002 + BACOVA_04356 0.33 +0.4
244,002 + BACOVA_04356 0.33 +0.5
244,003 - BACOVA_04356 0.34 -0.0
244,003 - BACOVA_04356 0.34 -0.3
244,003 - BACOVA_04356 0.34 -1.8
244,005 - BACOVA_04356 0.34 +0.2
244,027 - BACOVA_04356 0.35 -0.1
244,128 + BACOVA_04356 0.43 -0.1
244,128 + BACOVA_04356 0.43 -1.2
244,168 + BACOVA_04356 0.46 -0.7
244,169 - BACOVA_04356 0.47 +0.5
244,183 + BACOVA_04356 0.48 +0.3
244,187 - BACOVA_04356 0.48 -0.6
244,192 + BACOVA_04356 0.48 -0.9
244,193 - BACOVA_04356 0.48 +1.3
244,193 - BACOVA_04356 0.48 +0.5
244,254 + BACOVA_04356 0.53 -0.1
244,255 - BACOVA_04356 0.53 +0.6
244,265 - BACOVA_04356 0.54 +1.1
244,265 - BACOVA_04356 0.54 -0.0

Or see this region's nucleotide sequence