Experiment: Polygalacturonic 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03750 and BACOVA_03751 are separated by 55 nucleotides BACOVA_03751 and BACOVA_03752 are separated by 8 nucleotides BACOVA_03752 and BACOVA_03753 are separated by 2 nucleotides
BACOVA_03750: BACOVA_03750 - phosphate-selective porin O and P, at 80,242 to 81,612
_03750
BACOVA_03751: BACOVA_03751 - hypothetical protein, at 81,668 to 81,775
_03751
BACOVA_03752: BACOVA_03752 - carbamoyl-phosphate synthase, large subunit, at 81,784 to 85,011
_03752
BACOVA_03753: BACOVA_03753 - carbamoyl-phosphate synthase, small subunit, at 85,014 to 86,159
_03753
Position (kb) 81
82
83
84
85
86 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 80.880 kb on + strand, within BACOVA_03750 at 80.881 kb on - strand, within BACOVA_03750 at 80.885 kb on + strand, within BACOVA_03750 at 80.918 kb on + strand, within BACOVA_03750 at 80.923 kb on - strand, within BACOVA_03750 at 80.935 kb on + strand, within BACOVA_03750 at 80.989 kb on - strand, within BACOVA_03750 at 81.200 kb on + strand, within BACOVA_03750 at 81.209 kb on + strand, within BACOVA_03750 at 81.209 kb on + strand, within BACOVA_03750 at 81.213 kb on + strand, within BACOVA_03750 at 81.214 kb on - strand, within BACOVA_03750 at 81.220 kb on + strand, within BACOVA_03750 at 81.313 kb on - strand, within BACOVA_03750 at 81.425 kb on + strand, within BACOVA_03750 at 81.446 kb on - strand, within BACOVA_03750 at 81.516 kb on + strand at 81.516 kb on + strand at 81.517 kb on - strand at 81.559 kb on + strand at 81.559 kb on + strand at 81.660 kb on - strand at 81.678 kb on + strand at 81.682 kb on - strand, within BACOVA_03751 at 81.689 kb on + strand, within BACOVA_03751 at 81.729 kb on + strand, within BACOVA_03751 at 81.785 kb on + strand at 81.792 kb on - strand at 81.811 kb on - strand at 81.814 kb on + strand at 81.814 kb on + strand at 81.814 kb on + strand at 81.814 kb on + strand at 81.815 kb on - strand at 81.815 kb on - strand at 81.815 kb on - strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.817 kb on - strand at 81.835 kb on - strand at 81.876 kb on + strand at 81.888 kb on + strand at 81.888 kb on + strand at 81.888 kb on + strand at 81.927 kb on + strand at 81.928 kb on - strand at 81.931 kb on + strand at 81.932 kb on - strand at 81.968 kb on - strand at 82.035 kb on - strand at 82.080 kb on + strand at 82.179 kb on + strand, within BACOVA_03752 at 82.194 kb on + strand, within BACOVA_03752 at 82.239 kb on + strand, within BACOVA_03752 at 82.279 kb on - strand, within BACOVA_03752 at 82.349 kb on + strand, within BACOVA_03752 at 82.480 kb on - strand, within BACOVA_03752 at 82.498 kb on - strand, within BACOVA_03752 at 82.554 kb on + strand, within BACOVA_03752 at 82.572 kb on + strand, within BACOVA_03752 at 82.597 kb on + strand, within BACOVA_03752 at 82.645 kb on + strand, within BACOVA_03752 at 82.673 kb on - strand, within BACOVA_03752 at 82.673 kb on - strand, within BACOVA_03752 at 82.674 kb on + strand, within BACOVA_03752 at 82.674 kb on + strand, within BACOVA_03752 at 82.675 kb on - strand, within BACOVA_03752 at 82.675 kb on - strand, within BACOVA_03752 at 82.679 kb on + strand, within BACOVA_03752 at 82.754 kb on - strand, within BACOVA_03752 at 82.774 kb on + strand, within BACOVA_03752 at 82.779 kb on + strand, within BACOVA_03752 at 82.780 kb on - strand, within BACOVA_03752 at 82.780 kb on - strand, within BACOVA_03752 at 82.780 kb on - strand, within BACOVA_03752 at 82.883 kb on - strand, within BACOVA_03752 at 82.995 kb on + strand, within BACOVA_03752 at 82.996 kb on - strand, within BACOVA_03752 at 82.996 kb on - strand, within BACOVA_03752 at 83.001 kb on + strand, within BACOVA_03752 at 83.020 kb on + strand, within BACOVA_03752 at 83.020 kb on + strand, within BACOVA_03752 at 83.025 kb on + strand, within BACOVA_03752 at 83.025 kb on + strand, within BACOVA_03752 at 83.086 kb on + strand, within BACOVA_03752 at 83.087 kb on - strand, within BACOVA_03752 at 83.087 kb on - strand, within BACOVA_03752 at 83.122 kb on - strand, within BACOVA_03752 at 83.173 kb on - strand, within BACOVA_03752 at 83.204 kb on + strand, within BACOVA_03752 at 83.204 kb on + strand, within BACOVA_03752 at 83.314 kb on + strand, within BACOVA_03752 at 83.328 kb on + strand, within BACOVA_03752 at 83.328 kb on + strand, within BACOVA_03752 at 83.328 kb on + strand, within BACOVA_03752 at 83.359 kb on + strand, within BACOVA_03752 at 83.373 kb on + strand, within BACOVA_03752 at 83.374 kb on - strand, within BACOVA_03752 at 83.374 kb on - strand, within BACOVA_03752 at 83.379 kb on - strand, within BACOVA_03752 at 83.384 kb on + strand, within BACOVA_03752 at 83.384 kb on + strand, within BACOVA_03752 at 83.419 kb on - strand, within BACOVA_03752 at 83.419 kb on - strand, within BACOVA_03752 at 83.474 kb on + strand, within BACOVA_03752 at 83.498 kb on - strand, within BACOVA_03752 at 83.610 kb on + strand, within BACOVA_03752 at 83.611 kb on - strand, within BACOVA_03752 at 83.644 kb on + strand, within BACOVA_03752 at 83.673 kb on + strand, within BACOVA_03752 at 83.736 kb on + strand, within BACOVA_03752 at 83.742 kb on + strand, within BACOVA_03752 at 83.766 kb on + strand, within BACOVA_03752 at 83.782 kb on - strand, within BACOVA_03752 at 83.829 kb on + strand, within BACOVA_03752 at 83.848 kb on - strand, within BACOVA_03752 at 83.917 kb on - strand, within BACOVA_03752 at 83.935 kb on - strand, within BACOVA_03752 at 83.959 kb on - strand, within BACOVA_03752 at 83.959 kb on - strand, within BACOVA_03752 at 83.963 kb on - strand, within BACOVA_03752 at 83.969 kb on + strand, within BACOVA_03752 at 84.127 kb on + strand, within BACOVA_03752 at 84.170 kb on + strand, within BACOVA_03752 at 84.170 kb on + strand, within BACOVA_03752 at 84.171 kb on + strand, within BACOVA_03752 at 84.171 kb on - strand, within BACOVA_03752 at 84.175 kb on + strand, within BACOVA_03752 at 84.176 kb on - strand, within BACOVA_03752 at 84.213 kb on + strand, within BACOVA_03752 at 84.217 kb on + strand, within BACOVA_03752 at 84.217 kb on + strand, within BACOVA_03752 at 84.217 kb on + strand, within BACOVA_03752 at 84.217 kb on + strand, within BACOVA_03752 at 84.217 kb on + strand, within BACOVA_03752 at 84.237 kb on + strand, within BACOVA_03752 at 84.237 kb on + strand, within BACOVA_03752 at 84.238 kb on - strand, within BACOVA_03752 at 84.242 kb on + strand, within BACOVA_03752 at 84.339 kb on + strand, within BACOVA_03752 at 84.361 kb on + strand, within BACOVA_03752 at 84.371 kb on + strand, within BACOVA_03752 at 84.371 kb on + strand, within BACOVA_03752 at 84.372 kb on - strand, within BACOVA_03752 at 84.410 kb on - strand, within BACOVA_03752 at 84.412 kb on + strand, within BACOVA_03752 at 84.504 kb on - strand, within BACOVA_03752 at 84.520 kb on + strand, within BACOVA_03752 at 84.616 kb on - strand, within BACOVA_03752 at 84.687 kb on - strand, within BACOVA_03752 at 84.711 kb on - strand at 84.711 kb on - strand at 84.759 kb on + strand at 84.759 kb on + strand at 84.760 kb on - strand at 84.760 kb on - strand at 84.760 kb on - strand at 84.762 kb on + strand at 84.762 kb on + strand at 84.825 kb on - strand at 84.862 kb on - strand at 84.862 kb on - strand at 84.879 kb on + strand at 84.880 kb on - strand at 84.916 kb on - strand at 84.916 kb on - strand at 84.935 kb on + strand at 84.983 kb on - strand at 84.988 kb on + strand at 84.989 kb on - strand at 85.184 kb on + strand, within BACOVA_03753 at 85.187 kb on + strand, within BACOVA_03753 at 85.187 kb on + strand, within BACOVA_03753 at 85.187 kb on + strand, within BACOVA_03753 at 85.187 kb on + strand, within BACOVA_03753 at 85.187 kb on + strand, within BACOVA_03753 at 85.187 kb on + strand, within BACOVA_03753 at 85.187 kb on + strand, within BACOVA_03753 at 85.188 kb on - strand, within BACOVA_03753 at 85.240 kb on - strand, within BACOVA_03753 at 85.245 kb on - strand, within BACOVA_03753 at 85.265 kb on + strand, within BACOVA_03753 at 85.289 kb on - strand, within BACOVA_03753 at 85.380 kb on - strand, within BACOVA_03753 at 85.435 kb on - strand, within BACOVA_03753 at 85.465 kb on + strand, within BACOVA_03753 at 85.491 kb on + strand, within BACOVA_03753 at 85.492 kb on - strand, within BACOVA_03753 at 85.496 kb on + strand, within BACOVA_03753 at 85.497 kb on - strand, within BACOVA_03753 at 85.497 kb on - strand, within BACOVA_03753 at 85.520 kb on + strand, within BACOVA_03753 at 85.520 kb on + strand, within BACOVA_03753 at 85.521 kb on - strand, within BACOVA_03753 at 85.559 kb on + strand, within BACOVA_03753 at 85.648 kb on + strand, within BACOVA_03753 at 85.656 kb on - strand, within BACOVA_03753 at 85.671 kb on + strand, within BACOVA_03753 at 85.680 kb on + strand, within BACOVA_03753 at 85.681 kb on - strand, within BACOVA_03753 at 85.684 kb on + strand, within BACOVA_03753 at 85.684 kb on + strand, within BACOVA_03753 at 85.685 kb on - strand, within BACOVA_03753 at 85.685 kb on - strand, within BACOVA_03753 at 85.699 kb on + strand, within BACOVA_03753 at 85.778 kb on + strand, within BACOVA_03753 at 85.870 kb on + strand, within BACOVA_03753 at 85.870 kb on + strand, within BACOVA_03753 at 85.870 kb on + strand, within BACOVA_03753 at 85.877 kb on - strand, within BACOVA_03753 at 85.882 kb on + strand, within BACOVA_03753 at 85.959 kb on - strand, within BACOVA_03753 at 85.959 kb on - strand, within BACOVA_03753 at 85.980 kb on - strand, within BACOVA_03753 at 85.998 kb on - strand, within BACOVA_03753
Per-strain Table
Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C) remove 80,880 + BACOVA_03750 0.47 -1.4 80,881 - BACOVA_03750 0.47 -0.6 80,885 + BACOVA_03750 0.47 +1.5 80,918 + BACOVA_03750 0.49 +0.0 80,923 - BACOVA_03750 0.50 -0.2 80,935 + BACOVA_03750 0.51 +0.2 80,989 - BACOVA_03750 0.54 -0.8 81,200 + BACOVA_03750 0.70 +0.1 81,209 + BACOVA_03750 0.71 -0.1 81,209 + BACOVA_03750 0.71 -0.2 81,213 + BACOVA_03750 0.71 -1.0 81,214 - BACOVA_03750 0.71 +0.2 81,220 + BACOVA_03750 0.71 -1.0 81,313 - BACOVA_03750 0.78 -1.7 81,425 + BACOVA_03750 0.86 +0.1 81,446 - BACOVA_03750 0.88 -0.3 81,516 + +0.4 81,516 + -0.4 81,517 - +0.3 81,559 + +0.6 81,559 + -0.9 81,660 - -0.5 81,678 + -0.0 81,682 - BACOVA_03751 0.13 -0.5 81,689 + BACOVA_03751 0.19 -1.3 81,729 + BACOVA_03751 0.56 -1.9 81,785 + +0.6 81,792 - +0.5 81,811 - +0.2 81,814 + -0.8 81,814 + -1.3 81,814 + -0.6 81,814 + +0.1 81,815 - +1.1 81,815 - +0.2 81,815 - -0.4 81,816 + +0.5 81,816 + -0.0 81,817 - -0.3 81,835 - -0.1 81,876 + +0.1 81,888 + +0.5 81,888 + +0.2 81,888 + +0.7 81,927 + -0.4 81,928 - -1.2 81,931 + +0.3 81,932 - -0.7 81,968 - +0.0 82,035 - +0.3 82,080 + -1.4 82,179 + BACOVA_03752 0.12 -0.3 82,194 + BACOVA_03752 0.13 -0.3 82,239 + BACOVA_03752 0.14 -0.3 82,279 - BACOVA_03752 0.15 -0.4 82,349 + BACOVA_03752 0.18 -0.1 82,480 - BACOVA_03752 0.22 +0.4 82,498 - BACOVA_03752 0.22 +0.6 82,554 + BACOVA_03752 0.24 +0.1 82,572 + BACOVA_03752 0.24 +0.1 82,597 + BACOVA_03752 0.25 -0.8 82,645 + BACOVA_03752 0.27 +0.2 82,673 - BACOVA_03752 0.28 -0.7 82,673 - BACOVA_03752 0.28 +0.4 82,674 + BACOVA_03752 0.28 +0.7 82,674 + BACOVA_03752 0.28 +0.9 82,675 - BACOVA_03752 0.28 +0.8 82,675 - BACOVA_03752 0.28 -0.5 82,679 + BACOVA_03752 0.28 -1.6 82,754 - BACOVA_03752 0.30 +0.0 82,774 + BACOVA_03752 0.31 -0.9 82,779 + BACOVA_03752 0.31 +0.4 82,780 - BACOVA_03752 0.31 +2.2 82,780 - BACOVA_03752 0.31 +0.1 82,780 - BACOVA_03752 0.31 +0.2 82,883 - BACOVA_03752 0.34 +0.0 82,995 + BACOVA_03752 0.38 -0.7 82,996 - BACOVA_03752 0.38 -0.5 82,996 - BACOVA_03752 0.38 +0.1 83,001 + BACOVA_03752 0.38 -0.3 83,020 + BACOVA_03752 0.38 -0.8 83,020 + BACOVA_03752 0.38 -0.6 83,025 + BACOVA_03752 0.38 -1.2 83,025 + BACOVA_03752 0.38 -0.6 83,086 + BACOVA_03752 0.40 -0.8 83,087 - BACOVA_03752 0.40 +1.0 83,087 - BACOVA_03752 0.40 +0.2 83,122 - BACOVA_03752 0.41 -0.2 83,173 - BACOVA_03752 0.43 -0.2 83,204 + BACOVA_03752 0.44 -0.1 83,204 + BACOVA_03752 0.44 +0.8 83,314 + BACOVA_03752 0.47 +1.6 83,328 + BACOVA_03752 0.48 +0.2 83,328 + BACOVA_03752 0.48 -1.5 83,328 + BACOVA_03752 0.48 -0.2 83,359 + BACOVA_03752 0.49 -0.8 83,373 + BACOVA_03752 0.49 +0.0 83,374 - BACOVA_03752 0.49 +0.4 83,374 - BACOVA_03752 0.49 +0.2 83,379 - BACOVA_03752 0.49 -0.6 83,384 + BACOVA_03752 0.50 +0.2 83,384 + BACOVA_03752 0.50 -0.5 83,419 - BACOVA_03752 0.51 -0.9 83,419 - BACOVA_03752 0.51 +0.9 83,474 + BACOVA_03752 0.52 -0.5 83,498 - BACOVA_03752 0.53 +0.4 83,610 + BACOVA_03752 0.57 +1.1 83,611 - BACOVA_03752 0.57 +0.1 83,644 + BACOVA_03752 0.58 -1.7 83,673 + BACOVA_03752 0.59 +0.2 83,736 + BACOVA_03752 0.60 +1.4 83,742 + BACOVA_03752 0.61 -0.1 83,766 + BACOVA_03752 0.61 -0.8 83,782 - BACOVA_03752 0.62 -0.4 83,829 + BACOVA_03752 0.63 -0.4 83,848 - BACOVA_03752 0.64 +1.1 83,917 - BACOVA_03752 0.66 +0.5 83,935 - BACOVA_03752 0.67 -0.9 83,959 - BACOVA_03752 0.67 -0.5 83,959 - BACOVA_03752 0.67 -0.1 83,963 - BACOVA_03752 0.68 -4.3 83,969 + BACOVA_03752 0.68 +0.2 84,127 + BACOVA_03752 0.73 +0.7 84,170 + BACOVA_03752 0.74 -0.2 84,170 + BACOVA_03752 0.74 -0.8 84,171 + BACOVA_03752 0.74 +0.0 84,171 - BACOVA_03752 0.74 -0.8 84,175 + BACOVA_03752 0.74 -2.1 84,176 - BACOVA_03752 0.74 +0.3 84,213 + BACOVA_03752 0.75 +0.6 84,217 + BACOVA_03752 0.75 -0.5 84,217 + BACOVA_03752 0.75 -0.2 84,217 + BACOVA_03752 0.75 +1.1 84,217 + BACOVA_03752 0.75 -0.6 84,217 + BACOVA_03752 0.75 -0.6 84,237 + BACOVA_03752 0.76 -1.0 84,237 + BACOVA_03752 0.76 +1.6 84,238 - BACOVA_03752 0.76 +0.2 84,242 + BACOVA_03752 0.76 +0.3 84,339 + BACOVA_03752 0.79 +0.3 84,361 + BACOVA_03752 0.80 -0.5 84,371 + BACOVA_03752 0.80 -1.5 84,371 + BACOVA_03752 0.80 +0.1 84,372 - BACOVA_03752 0.80 +0.2 84,410 - BACOVA_03752 0.81 -0.8 84,412 + BACOVA_03752 0.81 -1.8 84,504 - BACOVA_03752 0.84 +1.1 84,520 + BACOVA_03752 0.85 -0.7 84,616 - BACOVA_03752 0.88 +0.1 84,687 - BACOVA_03752 0.90 -2.0 84,711 - -1.2 84,711 - -0.6 84,759 + +0.8 84,759 + -0.5 84,760 - +1.2 84,760 - -0.6 84,760 - -0.9 84,762 + -0.9 84,762 + +1.5 84,825 - +0.5 84,862 - +1.1 84,862 - -0.5 84,879 + +1.9 84,880 - -0.1 84,916 - -0.3 84,916 - -0.5 84,935 + +0.9 84,983 - -0.1 84,988 + +0.4 84,989 - -1.1 85,184 + BACOVA_03753 0.15 +0.2 85,187 + BACOVA_03753 0.15 -1.1 85,187 + BACOVA_03753 0.15 +0.9 85,187 + BACOVA_03753 0.15 -0.5 85,187 + BACOVA_03753 0.15 +0.1 85,187 + BACOVA_03753 0.15 -0.0 85,187 + BACOVA_03753 0.15 -2.3 85,187 + BACOVA_03753 0.15 -0.6 85,188 - BACOVA_03753 0.15 +0.1 85,240 - BACOVA_03753 0.20 +0.8 85,245 - BACOVA_03753 0.20 -0.6 85,265 + BACOVA_03753 0.22 +0.2 85,289 - BACOVA_03753 0.24 -0.5 85,380 - BACOVA_03753 0.32 +0.0 85,435 - BACOVA_03753 0.37 +0.3 85,465 + BACOVA_03753 0.39 +0.5 85,491 + BACOVA_03753 0.42 +0.9 85,492 - BACOVA_03753 0.42 -0.3 85,496 + BACOVA_03753 0.42 +0.2 85,497 - BACOVA_03753 0.42 +0.4 85,497 - BACOVA_03753 0.42 -0.2 85,520 + BACOVA_03753 0.44 +0.7 85,520 + BACOVA_03753 0.44 +0.4 85,521 - BACOVA_03753 0.44 +1.1 85,559 + BACOVA_03753 0.48 +0.7 85,648 + BACOVA_03753 0.55 +0.0 85,656 - BACOVA_03753 0.56 +0.6 85,671 + BACOVA_03753 0.57 +0.8 85,680 + BACOVA_03753 0.58 -0.9 85,681 - BACOVA_03753 0.58 +1.1 85,684 + BACOVA_03753 0.58 +1.4 85,684 + BACOVA_03753 0.58 +0.1 85,685 - BACOVA_03753 0.59 -0.6 85,685 - BACOVA_03753 0.59 -0.4 85,699 + BACOVA_03753 0.60 +0.4 85,778 + BACOVA_03753 0.67 -0.3 85,870 + BACOVA_03753 0.75 -0.3 85,870 + BACOVA_03753 0.75 -1.5 85,870 + BACOVA_03753 0.75 -1.7 85,877 - BACOVA_03753 0.75 +1.4 85,882 + BACOVA_03753 0.76 -1.2 85,959 - BACOVA_03753 0.82 -0.8 85,959 - BACOVA_03753 0.82 +0.4 85,980 - BACOVA_03753 0.84 +0.0 85,998 - BACOVA_03753 0.86 -1.1
Or see this region's nucleotide sequence