Experiment: Polygalacturonic 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02791 and BACOVA_02792 are separated by 761 nucleotides BACOVA_02792 and BACOVA_02793 are separated by 123 nucleotides BACOVA_02793 and BACOVA_02794 are separated by 91 nucleotides BACOVA_02794 and BACOVA_02795 are separated by 16 nucleotides
BACOVA_02791: BACOVA_02791 - hypothetical protein, at 245,112 to 246,839
_02791
BACOVA_02792: BACOVA_02792 - hypothetical protein, at 247,601 to 248,062
_02792
BACOVA_02793: BACOVA_02793 - hypothetical protein, at 248,186 to 248,374
_02793
BACOVA_02794: BACOVA_02794 - hypothetical protein, at 248,466 to 248,576
_02794
BACOVA_02795: BACOVA_02795 - glycosyl hydrolase family 2, sugar binding domain protein, at 248,593 to 250,803
_02795
Position (kb) 247
248
249 Strain fitness (log2 ratio) -2
-1
0
1
2 at 246.855 kb on + strand at 246.855 kb on + strand at 246.855 kb on + strand at 246.856 kb on - strand at 246.856 kb on - strand at 246.856 kb on - strand at 246.860 kb on - strand at 246.933 kb on - strand at 246.933 kb on - strand at 246.958 kb on + strand at 246.958 kb on + strand at 246.976 kb on + strand at 246.989 kb on + strand at 246.999 kb on + strand at 247.000 kb on - strand at 247.000 kb on - strand at 247.045 kb on + strand at 247.045 kb on + strand at 247.055 kb on + strand at 247.068 kb on + strand at 247.069 kb on - strand at 247.069 kb on - strand at 247.069 kb on - strand at 247.071 kb on - strand at 247.071 kb on - strand at 247.102 kb on + strand at 247.122 kb on + strand at 247.123 kb on - strand at 247.141 kb on - strand at 247.151 kb on - strand at 247.154 kb on - strand at 247.174 kb on - strand at 247.190 kb on + strand at 247.204 kb on + strand at 247.205 kb on - strand at 247.212 kb on + strand at 247.212 kb on + strand at 247.213 kb on - strand at 247.213 kb on - strand at 247.213 kb on - strand at 247.213 kb on - strand at 247.233 kb on + strand at 247.233 kb on + strand at 247.276 kb on - strand at 247.323 kb on + strand at 247.351 kb on + strand at 247.370 kb on + strand at 247.371 kb on - strand at 247.376 kb on + strand at 247.397 kb on + strand at 247.439 kb on - strand at 247.439 kb on - strand at 247.449 kb on - strand at 247.452 kb on + strand at 247.452 kb on + strand at 247.517 kb on + strand at 247.517 kb on + strand at 247.538 kb on + strand at 247.651 kb on + strand, within BACOVA_02792 at 247.695 kb on - strand, within BACOVA_02792 at 247.783 kb on + strand, within BACOVA_02792 at 247.785 kb on + strand, within BACOVA_02792 at 247.785 kb on + strand, within BACOVA_02792 at 247.786 kb on - strand, within BACOVA_02792 at 247.828 kb on - strand, within BACOVA_02792 at 247.828 kb on - strand, within BACOVA_02792 at 247.829 kb on + strand, within BACOVA_02792 at 247.830 kb on - strand, within BACOVA_02792 at 247.830 kb on - strand, within BACOVA_02792 at 247.849 kb on + strand, within BACOVA_02792 at 247.855 kb on + strand, within BACOVA_02792 at 247.965 kb on + strand, within BACOVA_02792 at 248.002 kb on + strand, within BACOVA_02792 at 248.005 kb on - strand, within BACOVA_02792 at 248.043 kb on - strand at 248.062 kb on + strand at 248.063 kb on - strand at 248.063 kb on - strand at 248.063 kb on - strand at 248.063 kb on - strand at 248.087 kb on - strand at 248.111 kb on + strand at 248.116 kb on + strand at 248.120 kb on - strand at 248.135 kb on + strand at 248.174 kb on + strand at 248.175 kb on - strand at 248.176 kb on + strand at 248.185 kb on - strand at 248.185 kb on - strand at 248.185 kb on - strand at 248.188 kb on - strand at 248.254 kb on + strand, within BACOVA_02793 at 248.254 kb on + strand, within BACOVA_02793 at 248.255 kb on - strand, within BACOVA_02793 at 248.281 kb on + strand, within BACOVA_02793 at 248.310 kb on + strand, within BACOVA_02793 at 248.312 kb on + strand, within BACOVA_02793 at 248.332 kb on + strand, within BACOVA_02793 at 248.332 kb on + strand, within BACOVA_02793 at 248.333 kb on - strand, within BACOVA_02793 at 248.342 kb on + strand, within BACOVA_02793 at 248.342 kb on + strand, within BACOVA_02793 at 248.342 kb on + strand, within BACOVA_02793 at 248.343 kb on - strand, within BACOVA_02793 at 248.343 kb on - strand, within BACOVA_02793 at 248.343 kb on - strand, within BACOVA_02793 at 248.416 kb on + strand at 248.416 kb on + strand at 248.416 kb on + strand at 248.419 kb on + strand at 248.419 kb on + strand at 248.435 kb on + strand at 248.435 kb on + strand at 248.436 kb on - strand at 248.442 kb on + strand at 248.517 kb on + strand, within BACOVA_02794 at 248.518 kb on - strand, within BACOVA_02794 at 248.528 kb on + strand, within BACOVA_02794 at 248.551 kb on - strand, within BACOVA_02794 at 248.554 kb on + strand, within BACOVA_02794 at 248.555 kb on - strand, within BACOVA_02794 at 248.559 kb on + strand, within BACOVA_02794 at 248.559 kb on + strand, within BACOVA_02794 at 248.560 kb on - strand, within BACOVA_02794 at 248.560 kb on - strand, within BACOVA_02794 at 248.565 kb on - strand, within BACOVA_02794 at 248.613 kb on - strand at 248.634 kb on + strand at 248.634 kb on + strand at 248.703 kb on - strand at 248.703 kb on - strand at 248.703 kb on - strand at 248.709 kb on + strand at 248.709 kb on + strand at 248.709 kb on + strand at 248.709 kb on + strand at 248.709 kb on + strand at 248.710 kb on - strand at 248.710 kb on - strand at 248.710 kb on - strand at 248.710 kb on - strand at 248.710 kb on - strand at 248.817 kb on + strand, within BACOVA_02795 at 248.826 kb on + strand, within BACOVA_02795 at 248.832 kb on + strand, within BACOVA_02795 at 248.842 kb on + strand, within BACOVA_02795 at 249.007 kb on + strand, within BACOVA_02795 at 249.008 kb on - strand, within BACOVA_02795 at 249.008 kb on - strand, within BACOVA_02795 at 249.028 kb on - strand, within BACOVA_02795 at 249.031 kb on + strand, within BACOVA_02795 at 249.044 kb on + strand, within BACOVA_02795 at 249.048 kb on + strand, within BACOVA_02795
Per-strain Table
Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C) remove 246,855 + +1.7 246,855 + +1.8 246,855 + -1.2 246,856 - -0.4 246,856 - -1.2 246,856 - -0.6 246,860 - +0.6 246,933 - +0.9 246,933 - +0.2 246,958 + -0.4 246,958 + -0.4 246,976 + -0.1 246,989 + -0.2 246,999 + +0.2 247,000 - -0.7 247,000 - -0.8 247,045 + +0.4 247,045 + -0.7 247,055 + +0.2 247,068 + +1.8 247,069 - +0.7 247,069 - +0.3 247,069 - +0.0 247,071 - +0.4 247,071 - -0.1 247,102 + -0.0 247,122 + +0.1 247,123 - +0.8 247,141 - +0.6 247,151 - +0.0 247,154 - +0.1 247,174 - -0.6 247,190 + -0.9 247,204 + +0.3 247,205 - +0.4 247,212 + -0.6 247,212 + +0.1 247,213 - -0.1 247,213 - +0.1 247,213 - -1.3 247,213 - +0.0 247,233 + -0.9 247,233 + -0.1 247,276 - +0.2 247,323 + +2.0 247,351 + +0.6 247,370 + +0.6 247,371 - -0.7 247,376 + +0.2 247,397 + +0.2 247,439 - -0.6 247,439 - +0.5 247,449 - +0.1 247,452 + +0.2 247,452 + +0.5 247,517 + -0.2 247,517 + +0.1 247,538 + +0.3 247,651 + BACOVA_02792 0.11 -0.0 247,695 - BACOVA_02792 0.20 -0.6 247,783 + BACOVA_02792 0.39 -0.1 247,785 + BACOVA_02792 0.40 +0.2 247,785 + BACOVA_02792 0.40 +0.4 247,786 - BACOVA_02792 0.40 -0.9 247,828 - BACOVA_02792 0.49 +0.0 247,828 - BACOVA_02792 0.49 -1.0 247,829 + BACOVA_02792 0.49 -0.4 247,830 - BACOVA_02792 0.50 -0.0 247,830 - BACOVA_02792 0.50 -0.5 247,849 + BACOVA_02792 0.54 -0.2 247,855 + BACOVA_02792 0.55 -0.4 247,965 + BACOVA_02792 0.79 -1.1 248,002 + BACOVA_02792 0.87 -0.1 248,005 - BACOVA_02792 0.87 -0.1 248,043 - +0.7 248,062 + -0.1 248,063 - +0.9 248,063 - -0.9 248,063 - +0.3 248,063 - +0.1 248,087 - +1.2 248,111 + -0.3 248,116 + +1.0 248,120 - +1.4 248,135 + -0.2 248,174 + +0.4 248,175 - -0.1 248,176 + -0.7 248,185 - +0.8 248,185 - +1.7 248,185 - +2.0 248,188 - +1.5 248,254 + BACOVA_02793 0.36 -0.3 248,254 + BACOVA_02793 0.36 +0.4 248,255 - BACOVA_02793 0.37 +1.7 248,281 + BACOVA_02793 0.50 -0.1 248,310 + BACOVA_02793 0.66 -0.5 248,312 + BACOVA_02793 0.67 -2.4 248,332 + BACOVA_02793 0.77 +0.8 248,332 + BACOVA_02793 0.77 -0.6 248,333 - BACOVA_02793 0.78 +0.2 248,342 + BACOVA_02793 0.83 -0.1 248,342 + BACOVA_02793 0.83 -0.9 248,342 + BACOVA_02793 0.83 -0.2 248,343 - BACOVA_02793 0.83 +0.5 248,343 - BACOVA_02793 0.83 +0.7 248,343 - BACOVA_02793 0.83 +0.5 248,416 + -0.5 248,416 + +0.4 248,416 + +0.3 248,419 + -0.1 248,419 + -0.8 248,435 + +0.4 248,435 + -0.9 248,436 - +0.9 248,442 + -0.3 248,517 + BACOVA_02794 0.46 +0.2 248,518 - BACOVA_02794 0.47 -0.2 248,528 + BACOVA_02794 0.56 +0.6 248,551 - BACOVA_02794 0.77 +0.2 248,554 + BACOVA_02794 0.79 -1.5 248,555 - BACOVA_02794 0.80 -0.5 248,559 + BACOVA_02794 0.84 +0.6 248,559 + BACOVA_02794 0.84 +0.4 248,560 - BACOVA_02794 0.85 -0.8 248,560 - BACOVA_02794 0.85 +0.2 248,565 - BACOVA_02794 0.89 +0.8 248,613 - -1.0 248,634 + +0.2 248,634 + -0.2 248,703 - -1.2 248,703 - +0.5 248,703 - +0.1 248,709 + +0.3 248,709 + -0.5 248,709 + -0.5 248,709 + -0.1 248,709 + -0.7 248,710 - +0.4 248,710 - -0.4 248,710 - +0.6 248,710 - +0.4 248,710 - +0.1 248,817 + BACOVA_02795 0.10 -0.7 248,826 + BACOVA_02795 0.11 -0.1 248,832 + BACOVA_02795 0.11 +1.3 248,842 + BACOVA_02795 0.11 +1.8 249,007 + BACOVA_02795 0.19 +0.4 249,008 - BACOVA_02795 0.19 -0.9 249,008 - BACOVA_02795 0.19 +0.2 249,028 - BACOVA_02795 0.20 +0.9 249,031 + BACOVA_02795 0.20 -1.4 249,044 + BACOVA_02795 0.20 -0.7 249,048 + BACOVA_02795 0.21 +0.8
Or see this region's nucleotide sequence