Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01278

Experiment: Polygalacturonic 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01277 and BACOVA_01278 are separated by 46 nucleotidesBACOVA_01278 and BACOVA_01279 are separated by 156 nucleotides BACOVA_01277: BACOVA_01277 - transporter, major facilitator family protein, at 64,479 to 65,654 _01277 BACOVA_01278: BACOVA_01278 - hypothetical protein, at 65,701 to 66,135 _01278 BACOVA_01279: BACOVA_01279 - Na+/H+ antiporter NhaC, at 66,292 to 67,719 _01279 Position (kb) 65 66 67Strain fitness (log2 ratio) -2 -1 0 1 2at 64.702 kb on + strand, within BACOVA_01277at 64.702 kb on + strand, within BACOVA_01277at 64.702 kb on + strand, within BACOVA_01277at 64.703 kb on - strand, within BACOVA_01277at 64.703 kb on - strand, within BACOVA_01277at 64.703 kb on - strand, within BACOVA_01277at 64.703 kb on - strand, within BACOVA_01277at 64.703 kb on - strand, within BACOVA_01277at 64.705 kb on - strand, within BACOVA_01277at 64.747 kb on + strand, within BACOVA_01277at 64.747 kb on + strand, within BACOVA_01277at 64.748 kb on - strand, within BACOVA_01277at 64.796 kb on + strand, within BACOVA_01277at 64.840 kb on + strand, within BACOVA_01277at 64.881 kb on - strand, within BACOVA_01277at 64.915 kb on + strand, within BACOVA_01277at 65.012 kb on + strand, within BACOVA_01277at 65.013 kb on - strand, within BACOVA_01277at 65.013 kb on - strand, within BACOVA_01277at 65.030 kb on - strand, within BACOVA_01277at 65.032 kb on + strand, within BACOVA_01277at 65.033 kb on - strand, within BACOVA_01277at 65.074 kb on - strand, within BACOVA_01277at 65.076 kb on - strand, within BACOVA_01277at 65.195 kb on + strand, within BACOVA_01277at 65.233 kb on + strand, within BACOVA_01277at 65.245 kb on + strand, within BACOVA_01277at 65.246 kb on - strand, within BACOVA_01277at 65.296 kb on - strand, within BACOVA_01277at 65.300 kb on - strand, within BACOVA_01277at 65.308 kb on + strand, within BACOVA_01277at 65.308 kb on + strand, within BACOVA_01277at 65.390 kb on + strand, within BACOVA_01277at 65.390 kb on + strand, within BACOVA_01277at 65.397 kb on - strand, within BACOVA_01277at 65.426 kb on - strand, within BACOVA_01277at 65.426 kb on - strand, within BACOVA_01277at 65.438 kb on + strand, within BACOVA_01277at 65.447 kb on + strand, within BACOVA_01277at 65.447 kb on + strand, within BACOVA_01277at 65.447 kb on + strand, within BACOVA_01277at 65.448 kb on - strand, within BACOVA_01277at 65.501 kb on + strand, within BACOVA_01277at 65.520 kb on + strand, within BACOVA_01277at 65.521 kb on - strand, within BACOVA_01277at 65.574 kb on + strandat 65.575 kb on - strandat 65.630 kb on - strandat 65.633 kb on + strandat 65.633 kb on + strandat 65.686 kb on - strandat 65.729 kb on + strandat 65.773 kb on - strand, within BACOVA_01278at 65.784 kb on - strand, within BACOVA_01278at 65.792 kb on + strand, within BACOVA_01278at 65.801 kb on + strand, within BACOVA_01278at 65.841 kb on + strand, within BACOVA_01278at 65.899 kb on - strand, within BACOVA_01278at 65.971 kb on - strand, within BACOVA_01278at 66.009 kb on + strand, within BACOVA_01278at 66.010 kb on - strand, within BACOVA_01278at 66.049 kb on + strand, within BACOVA_01278at 66.111 kb on - strandat 66.118 kb on - strandat 66.130 kb on - strandat 66.144 kb on + strandat 66.146 kb on + strandat 66.146 kb on + strandat 66.146 kb on + strandat 66.146 kb on + strandat 66.146 kb on + strandat 66.147 kb on - strandat 66.147 kb on - strandat 66.150 kb on + strandat 66.150 kb on + strandat 66.150 kb on + strandat 66.151 kb on - strandat 66.257 kb on - strandat 66.272 kb on - strandat 66.281 kb on + strandat 66.282 kb on - strandat 66.318 kb on - strandat 66.338 kb on + strandat 66.339 kb on - strandat 66.347 kb on + strandat 66.350 kb on + strandat 66.430 kb on - strandat 66.460 kb on - strand, within BACOVA_01279at 66.528 kb on + strand, within BACOVA_01279at 66.533 kb on + strand, within BACOVA_01279at 66.579 kb on - strand, within BACOVA_01279at 66.585 kb on + strand, within BACOVA_01279at 66.585 kb on + strand, within BACOVA_01279at 66.691 kb on - strand, within BACOVA_01279at 66.699 kb on + strand, within BACOVA_01279at 66.700 kb on - strand, within BACOVA_01279at 66.700 kb on - strand, within BACOVA_01279at 66.838 kb on - strand, within BACOVA_01279at 66.838 kb on - strand, within BACOVA_01279at 66.882 kb on + strand, within BACOVA_01279at 66.886 kb on - strand, within BACOVA_01279at 66.916 kb on - strand, within BACOVA_01279at 66.955 kb on - strand, within BACOVA_01279at 67.016 kb on + strand, within BACOVA_01279at 67.023 kb on - strand, within BACOVA_01279at 67.069 kb on - strand, within BACOVA_01279

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Per-strain Table

Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C)
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64,702 + BACOVA_01277 0.19 -0.0
64,702 + BACOVA_01277 0.19 +0.5
64,702 + BACOVA_01277 0.19 +1.0
64,703 - BACOVA_01277 0.19 +0.9
64,703 - BACOVA_01277 0.19 +0.4
64,703 - BACOVA_01277 0.19 +1.0
64,703 - BACOVA_01277 0.19 +0.1
64,703 - BACOVA_01277 0.19 +0.1
64,705 - BACOVA_01277 0.19 -0.0
64,747 + BACOVA_01277 0.23 -1.4
64,747 + BACOVA_01277 0.23 -0.2
64,748 - BACOVA_01277 0.23 +0.5
64,796 + BACOVA_01277 0.27 +0.1
64,840 + BACOVA_01277 0.31 +0.4
64,881 - BACOVA_01277 0.34 -1.7
64,915 + BACOVA_01277 0.37 +1.3
65,012 + BACOVA_01277 0.45 -0.4
65,013 - BACOVA_01277 0.45 -0.7
65,013 - BACOVA_01277 0.45 -0.9
65,030 - BACOVA_01277 0.47 +1.3
65,032 + BACOVA_01277 0.47 +0.3
65,033 - BACOVA_01277 0.47 -0.5
65,074 - BACOVA_01277 0.51 +1.0
65,076 - BACOVA_01277 0.51 -0.0
65,195 + BACOVA_01277 0.61 -0.2
65,233 + BACOVA_01277 0.64 -0.0
65,245 + BACOVA_01277 0.65 +1.0
65,246 - BACOVA_01277 0.65 +0.6
65,296 - BACOVA_01277 0.69 +1.6
65,300 - BACOVA_01277 0.70 +0.0
65,308 + BACOVA_01277 0.70 -0.9
65,308 + BACOVA_01277 0.70 -0.7
65,390 + BACOVA_01277 0.77 -0.7
65,390 + BACOVA_01277 0.77 +0.2
65,397 - BACOVA_01277 0.78 +0.5
65,426 - BACOVA_01277 0.81 -0.3
65,426 - BACOVA_01277 0.81 +0.1
65,438 + BACOVA_01277 0.82 -0.9
65,447 + BACOVA_01277 0.82 -1.9
65,447 + BACOVA_01277 0.82 -0.1
65,447 + BACOVA_01277 0.82 +0.6
65,448 - BACOVA_01277 0.82 -0.6
65,501 + BACOVA_01277 0.87 +0.5
65,520 + BACOVA_01277 0.89 -1.1
65,521 - BACOVA_01277 0.89 +0.3
65,574 + -1.3
65,575 - +1.5
65,630 - +1.4
65,633 + +0.3
65,633 + -0.6
65,686 - +1.5
65,729 + +1.1
65,773 - BACOVA_01278 0.17 +1.7
65,784 - BACOVA_01278 0.19 +1.2
65,792 + BACOVA_01278 0.21 +0.1
65,801 + BACOVA_01278 0.23 +0.4
65,841 + BACOVA_01278 0.32 +1.7
65,899 - BACOVA_01278 0.46 +2.6
65,971 - BACOVA_01278 0.62 +2.7
66,009 + BACOVA_01278 0.71 +1.1
66,010 - BACOVA_01278 0.71 +1.8
66,049 + BACOVA_01278 0.80 +1.9
66,111 - -0.6
66,118 - +1.2
66,130 - +1.1
66,144 + -1.4
66,146 + +0.4
66,146 + +0.8
66,146 + -1.4
66,146 + +0.6
66,146 + -0.2
66,147 - +1.0
66,147 - +0.2
66,150 + -0.6
66,150 + +0.7
66,150 + +1.3
66,151 - -0.2
66,257 - +0.3
66,272 - -0.6
66,281 + +0.5
66,282 - -0.9
66,318 - +0.4
66,338 + -0.0
66,339 - +0.9
66,347 + -0.2
66,350 + +0.3
66,430 - +1.1
66,460 - BACOVA_01279 0.12 +1.2
66,528 + BACOVA_01279 0.17 +0.8
66,533 + BACOVA_01279 0.17 -0.2
66,579 - BACOVA_01279 0.20 -0.5
66,585 + BACOVA_01279 0.21 +1.1
66,585 + BACOVA_01279 0.21 -0.3
66,691 - BACOVA_01279 0.28 -0.7
66,699 + BACOVA_01279 0.29 -0.9
66,700 - BACOVA_01279 0.29 +0.6
66,700 - BACOVA_01279 0.29 +0.4
66,838 - BACOVA_01279 0.38 +0.4
66,838 - BACOVA_01279 0.38 -0.2
66,882 + BACOVA_01279 0.41 -0.7
66,886 - BACOVA_01279 0.42 +0.0
66,916 - BACOVA_01279 0.44 +0.4
66,955 - BACOVA_01279 0.46 +0.3
67,016 + BACOVA_01279 0.51 +0.8
67,023 - BACOVA_01279 0.51 -0.0
67,069 - BACOVA_01279 0.54 +0.4

Or see this region's nucleotide sequence