Experiment: Polygalacturonic 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00901 and BACOVA_00903 overlap by 7 nucleotides BACOVA_00903 and BACOVA_00904 are separated by 558 nucleotides BACOVA_00904 and BACOVA_00905 are separated by 115 nucleotides
BACOVA_00901: BACOVA_00901 - Alpha-L-rhamnosidase N-terminal domain protein, at 31,862 to 34,519
_00901
BACOVA_00903: BACOVA_00903 - glycosyl hydrolase family 2, sugar binding domain protein, at 34,513 to 34,719
_00903
BACOVA_00904: BACOVA_00904 - DEAD/DEAH box helicase, at 35,278 to 37,212
_00904
BACOVA_00905: BACOVA_00905 - tyrosine phosphatase family, at 37,328 to 38,317
_00905
Position (kb) 35
36
37
38 Strain fitness (log2 ratio) -2
-1
0
1
2 at 34.369 kb on + strand at 34.381 kb on + strand at 34.382 kb on - strand at 34.382 kb on - strand at 34.382 kb on - strand at 34.396 kb on - strand at 34.412 kb on - strand at 34.427 kb on + strand at 34.483 kb on + strand at 34.484 kb on - strand at 34.484 kb on - strand at 34.495 kb on - strand at 34.553 kb on - strand, within BACOVA_00903 at 34.576 kb on + strand, within BACOVA_00903 at 34.576 kb on + strand, within BACOVA_00903 at 34.577 kb on - strand, within BACOVA_00903 at 34.577 kb on - strand, within BACOVA_00903 at 34.597 kb on + strand, within BACOVA_00903 at 34.597 kb on + strand, within BACOVA_00903 at 34.597 kb on + strand, within BACOVA_00903 at 34.597 kb on + strand, within BACOVA_00903 at 34.598 kb on - strand, within BACOVA_00903 at 34.598 kb on - strand, within BACOVA_00903 at 34.598 kb on - strand, within BACOVA_00903 at 34.598 kb on - strand, within BACOVA_00903 at 34.598 kb on - strand, within BACOVA_00903 at 34.599 kb on + strand, within BACOVA_00903 at 34.599 kb on + strand, within BACOVA_00903 at 34.599 kb on + strand, within BACOVA_00903 at 34.599 kb on + strand, within BACOVA_00903 at 34.600 kb on - strand, within BACOVA_00903 at 34.648 kb on - strand, within BACOVA_00903 at 34.648 kb on - strand, within BACOVA_00903 at 34.648 kb on - strand, within BACOVA_00903 at 34.679 kb on + strand, within BACOVA_00903 at 34.680 kb on - strand, within BACOVA_00903 at 34.729 kb on - strand at 34.746 kb on - strand at 34.755 kb on + strand at 34.755 kb on + strand at 34.756 kb on - strand at 34.756 kb on - strand at 34.792 kb on - strand at 34.802 kb on + strand at 34.809 kb on - strand at 34.811 kb on + strand at 34.812 kb on - strand at 34.830 kb on + strand at 34.831 kb on - strand at 34.854 kb on - strand at 34.860 kb on + strand at 34.885 kb on + strand at 34.886 kb on - strand at 34.899 kb on + strand at 34.906 kb on - strand at 34.911 kb on + strand at 34.911 kb on + strand at 34.911 kb on + strand at 34.915 kb on - strand at 34.915 kb on - strand at 34.916 kb on + strand at 34.982 kb on - strand at 34.982 kb on - strand at 35.047 kb on - strand at 35.050 kb on + strand at 35.069 kb on - strand at 35.072 kb on - strand at 35.075 kb on + strand at 35.076 kb on - strand at 35.076 kb on - strand at 35.081 kb on + strand at 35.085 kb on - strand at 35.113 kb on + strand at 35.128 kb on - strand at 35.164 kb on + strand at 35.176 kb on - strand at 35.194 kb on + strand at 35.211 kb on - strand at 35.243 kb on - strand at 35.263 kb on - strand at 35.276 kb on - strand at 35.334 kb on + strand at 35.335 kb on - strand at 35.410 kb on - strand at 35.415 kb on + strand at 35.415 kb on + strand at 35.467 kb on - strand at 35.472 kb on + strand, within BACOVA_00904 at 35.472 kb on + strand, within BACOVA_00904 at 35.638 kb on + strand, within BACOVA_00904 at 35.639 kb on - strand, within BACOVA_00904 at 35.679 kb on - strand, within BACOVA_00904 at 35.679 kb on - strand, within BACOVA_00904 at 35.689 kb on + strand, within BACOVA_00904 at 35.890 kb on + strand, within BACOVA_00904 at 35.890 kb on + strand, within BACOVA_00904 at 35.916 kb on - strand, within BACOVA_00904 at 35.918 kb on + strand, within BACOVA_00904 at 36.010 kb on - strand, within BACOVA_00904 at 36.066 kb on + strand, within BACOVA_00904 at 36.144 kb on + strand, within BACOVA_00904 at 36.188 kb on + strand, within BACOVA_00904 at 36.235 kb on - strand, within BACOVA_00904 at 36.236 kb on + strand, within BACOVA_00904 at 36.237 kb on - strand, within BACOVA_00904 at 36.237 kb on - strand, within BACOVA_00904 at 36.237 kb on - strand, within BACOVA_00904 at 36.237 kb on - strand, within BACOVA_00904 at 36.237 kb on - strand, within BACOVA_00904 at 36.270 kb on + strand, within BACOVA_00904 at 36.270 kb on + strand, within BACOVA_00904 at 36.271 kb on - strand, within BACOVA_00904 at 36.271 kb on - strand, within BACOVA_00904 at 36.289 kb on + strand, within BACOVA_00904 at 36.360 kb on + strand, within BACOVA_00904 at 36.427 kb on + strand, within BACOVA_00904 at 36.463 kb on - strand, within BACOVA_00904 at 36.477 kb on + strand, within BACOVA_00904 at 36.482 kb on + strand, within BACOVA_00904 at 36.507 kb on + strand, within BACOVA_00904 at 36.508 kb on - strand, within BACOVA_00904 at 36.548 kb on + strand, within BACOVA_00904 at 36.692 kb on - strand, within BACOVA_00904 at 36.777 kb on + strand, within BACOVA_00904 at 36.778 kb on - strand, within BACOVA_00904 at 36.781 kb on + strand, within BACOVA_00904 at 36.781 kb on + strand, within BACOVA_00904 at 36.781 kb on + strand, within BACOVA_00904 at 36.782 kb on - strand, within BACOVA_00904 at 36.788 kb on - strand, within BACOVA_00904 at 36.828 kb on + strand, within BACOVA_00904 at 36.833 kb on - strand, within BACOVA_00904 at 36.833 kb on - strand, within BACOVA_00904 at 36.866 kb on - strand, within BACOVA_00904 at 36.866 kb on - strand, within BACOVA_00904 at 36.866 kb on - strand, within BACOVA_00904 at 36.866 kb on - strand, within BACOVA_00904 at 36.893 kb on + strand, within BACOVA_00904 at 36.893 kb on + strand, within BACOVA_00904 at 36.893 kb on + strand, within BACOVA_00904 at 36.893 kb on + strand, within BACOVA_00904 at 36.895 kb on + strand, within BACOVA_00904 at 36.895 kb on + strand, within BACOVA_00904 at 36.895 kb on + strand, within BACOVA_00904 at 36.896 kb on - strand, within BACOVA_00904 at 36.899 kb on - strand, within BACOVA_00904 at 36.902 kb on - strand, within BACOVA_00904 at 36.904 kb on + strand, within BACOVA_00904 at 36.911 kb on - strand, within BACOVA_00904 at 36.923 kb on + strand, within BACOVA_00904 at 36.952 kb on + strand, within BACOVA_00904 at 37.085 kb on - strand at 37.085 kb on - strand at 37.085 kb on - strand at 37.085 kb on - strand at 37.103 kb on - strand at 37.174 kb on + strand at 37.214 kb on - strand at 37.224 kb on - strand at 37.279 kb on + strand at 37.283 kb on - strand at 37.307 kb on + strand at 37.319 kb on + strand at 37.319 kb on + strand at 37.329 kb on + strand at 37.330 kb on - strand at 37.330 kb on - strand at 37.344 kb on - strand at 37.401 kb on + strand at 37.402 kb on - strand at 37.410 kb on - strand at 37.419 kb on + strand at 37.474 kb on - strand, within BACOVA_00905 at 37.483 kb on + strand, within BACOVA_00905 at 37.484 kb on - strand, within BACOVA_00905 at 37.513 kb on + strand, within BACOVA_00905 at 37.513 kb on + strand, within BACOVA_00905 at 37.514 kb on - strand, within BACOVA_00905 at 37.514 kb on - strand, within BACOVA_00905 at 37.514 kb on - strand, within BACOVA_00905 at 37.515 kb on + strand, within BACOVA_00905 at 37.515 kb on + strand, within BACOVA_00905 at 37.516 kb on - strand, within BACOVA_00905 at 37.521 kb on + strand, within BACOVA_00905 at 37.522 kb on - strand, within BACOVA_00905 at 37.540 kb on + strand, within BACOVA_00905 at 37.543 kb on + strand, within BACOVA_00905 at 37.543 kb on + strand, within BACOVA_00905 at 37.544 kb on - strand, within BACOVA_00905 at 37.555 kb on + strand, within BACOVA_00905 at 37.566 kb on + strand, within BACOVA_00905 at 37.576 kb on + strand, within BACOVA_00905 at 37.614 kb on - strand, within BACOVA_00905 at 37.651 kb on + strand, within BACOVA_00905 at 37.651 kb on + strand, within BACOVA_00905 at 37.652 kb on - strand, within BACOVA_00905 at 37.722 kb on + strand, within BACOVA_00905 at 37.723 kb on - strand, within BACOVA_00905 at 37.728 kb on - strand, within BACOVA_00905 at 37.734 kb on - strand, within BACOVA_00905 at 37.754 kb on + strand, within BACOVA_00905 at 37.754 kb on + strand, within BACOVA_00905 at 37.764 kb on + strand, within BACOVA_00905 at 37.769 kb on - strand, within BACOVA_00905 at 37.781 kb on + strand, within BACOVA_00905 at 37.840 kb on + strand, within BACOVA_00905 at 37.840 kb on + strand, within BACOVA_00905 at 37.840 kb on + strand, within BACOVA_00905 at 37.844 kb on + strand, within BACOVA_00905 at 37.844 kb on + strand, within BACOVA_00905 at 37.844 kb on + strand, within BACOVA_00905 at 37.844 kb on + strand, within BACOVA_00905 at 37.844 kb on + strand, within BACOVA_00905 at 37.845 kb on - strand, within BACOVA_00905 at 37.845 kb on - strand, within BACOVA_00905 at 37.845 kb on - strand, within BACOVA_00905 at 37.845 kb on - strand, within BACOVA_00905 at 37.878 kb on + strand, within BACOVA_00905 at 37.904 kb on + strand, within BACOVA_00905 at 37.904 kb on + strand, within BACOVA_00905 at 37.905 kb on - strand, within BACOVA_00905 at 37.905 kb on - strand, within BACOVA_00905 at 37.910 kb on + strand, within BACOVA_00905 at 37.910 kb on + strand, within BACOVA_00905 at 37.911 kb on - strand, within BACOVA_00905 at 37.936 kb on + strand, within BACOVA_00905 at 37.937 kb on - strand, within BACOVA_00905 at 37.986 kb on + strand, within BACOVA_00905 at 37.986 kb on + strand, within BACOVA_00905 at 37.989 kb on - strand, within BACOVA_00905 at 38.032 kb on - strand, within BACOVA_00905 at 38.071 kb on + strand, within BACOVA_00905 at 38.072 kb on - strand, within BACOVA_00905 at 38.072 kb on - strand, within BACOVA_00905 at 38.108 kb on - strand, within BACOVA_00905 at 38.110 kb on + strand, within BACOVA_00905 at 38.114 kb on + strand, within BACOVA_00905 at 38.124 kb on + strand, within BACOVA_00905 at 38.124 kb on + strand, within BACOVA_00905 at 38.125 kb on - strand, within BACOVA_00905 at 38.128 kb on - strand, within BACOVA_00905 at 38.131 kb on - strand, within BACOVA_00905 at 38.154 kb on - strand, within BACOVA_00905 at 38.167 kb on + strand, within BACOVA_00905 at 38.168 kb on - strand, within BACOVA_00905 at 38.212 kb on + strand, within BACOVA_00905
Per-strain Table
Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C) remove 34,369 + -0.4 34,381 + +0.2 34,382 - -0.6 34,382 - -0.6 34,382 - -0.7 34,396 - -0.4 34,412 - +0.8 34,427 + +0.7 34,483 + +1.0 34,484 - +1.5 34,484 - +0.8 34,495 - +0.0 34,553 - BACOVA_00903 0.19 +0.7 34,576 + BACOVA_00903 0.30 -1.0 34,576 + BACOVA_00903 0.30 -0.0 34,577 - BACOVA_00903 0.31 -0.3 34,577 - BACOVA_00903 0.31 -0.3 34,597 + BACOVA_00903 0.41 +0.3 34,597 + BACOVA_00903 0.41 +0.4 34,597 + BACOVA_00903 0.41 +0.1 34,597 + BACOVA_00903 0.41 +0.4 34,598 - BACOVA_00903 0.41 +0.1 34,598 - BACOVA_00903 0.41 -0.8 34,598 - BACOVA_00903 0.41 +1.0 34,598 - BACOVA_00903 0.41 +0.6 34,598 - BACOVA_00903 0.41 +0.5 34,599 + BACOVA_00903 0.42 -0.2 34,599 + BACOVA_00903 0.42 -0.7 34,599 + BACOVA_00903 0.42 -0.4 34,599 + BACOVA_00903 0.42 -0.8 34,600 - BACOVA_00903 0.42 +1.5 34,648 - BACOVA_00903 0.65 +0.2 34,648 - BACOVA_00903 0.65 -0.4 34,648 - BACOVA_00903 0.65 -0.4 34,679 + BACOVA_00903 0.80 -0.5 34,680 - BACOVA_00903 0.81 -0.3 34,729 - +0.0 34,746 - +0.3 34,755 + +0.2 34,755 + +0.1 34,756 - -1.2 34,756 - -0.2 34,792 - -1.6 34,802 + -0.2 34,809 - -0.5 34,811 + -0.7 34,812 - -0.0 34,830 + +0.5 34,831 - -0.0 34,854 - +0.4 34,860 + +0.4 34,885 + +0.4 34,886 - +1.7 34,899 + +0.3 34,906 - +0.0 34,911 + +0.2 34,911 + -0.1 34,911 + -0.6 34,915 - +0.0 34,915 - +0.3 34,916 + +0.0 34,982 - -0.6 34,982 - -0.8 35,047 - +0.4 35,050 + +0.3 35,069 - -1.1 35,072 - -0.1 35,075 + -0.5 35,076 - -0.1 35,076 - -0.3 35,081 + +0.8 35,085 - -1.3 35,113 + -0.2 35,128 - +0.3 35,164 + +0.3 35,176 - +0.5 35,194 + +0.1 35,211 - -0.2 35,243 - +0.8 35,263 - -0.1 35,276 - -1.6 35,334 + +1.4 35,335 - -0.6 35,410 - -0.3 35,415 + -0.9 35,415 + -0.2 35,467 - -0.4 35,472 + BACOVA_00904 0.10 -0.6 35,472 + BACOVA_00904 0.10 +0.5 35,638 + BACOVA_00904 0.19 -1.8 35,639 - BACOVA_00904 0.19 -1.3 35,679 - BACOVA_00904 0.21 -1.1 35,679 - BACOVA_00904 0.21 +0.6 35,689 + BACOVA_00904 0.21 -0.5 35,890 + BACOVA_00904 0.32 -0.5 35,890 + BACOVA_00904 0.32 +0.4 35,916 - BACOVA_00904 0.33 -0.6 35,918 + BACOVA_00904 0.33 -1.2 36,010 - BACOVA_00904 0.38 -0.2 36,066 + BACOVA_00904 0.41 -0.7 36,144 + BACOVA_00904 0.45 +0.8 36,188 + BACOVA_00904 0.47 -0.2 36,235 - BACOVA_00904 0.49 -1.2 36,236 + BACOVA_00904 0.50 -0.5 36,237 - BACOVA_00904 0.50 -1.5 36,237 - BACOVA_00904 0.50 +0.4 36,237 - BACOVA_00904 0.50 -1.1 36,237 - BACOVA_00904 0.50 +0.1 36,237 - BACOVA_00904 0.50 +0.5 36,270 + BACOVA_00904 0.51 +0.4 36,270 + BACOVA_00904 0.51 -0.5 36,271 - BACOVA_00904 0.51 +0.0 36,271 - BACOVA_00904 0.51 -1.7 36,289 + BACOVA_00904 0.52 +0.7 36,360 + BACOVA_00904 0.56 -0.2 36,427 + BACOVA_00904 0.59 +0.7 36,463 - BACOVA_00904 0.61 -0.6 36,477 + BACOVA_00904 0.62 -0.3 36,482 + BACOVA_00904 0.62 -1.1 36,507 + BACOVA_00904 0.64 +0.7 36,508 - BACOVA_00904 0.64 +0.8 36,548 + BACOVA_00904 0.66 -0.4 36,692 - BACOVA_00904 0.73 -1.1 36,777 + BACOVA_00904 0.77 +1.0 36,778 - BACOVA_00904 0.78 +1.0 36,781 + BACOVA_00904 0.78 -1.3 36,781 + BACOVA_00904 0.78 -0.9 36,781 + BACOVA_00904 0.78 -0.7 36,782 - BACOVA_00904 0.78 +0.2 36,788 - BACOVA_00904 0.78 -0.0 36,828 + BACOVA_00904 0.80 +0.2 36,833 - BACOVA_00904 0.80 -2.5 36,833 - BACOVA_00904 0.80 -1.1 36,866 - BACOVA_00904 0.82 -1.5 36,866 - BACOVA_00904 0.82 -0.3 36,866 - BACOVA_00904 0.82 -0.5 36,866 - BACOVA_00904 0.82 -0.3 36,893 + BACOVA_00904 0.83 -0.3 36,893 + BACOVA_00904 0.83 -1.7 36,893 + BACOVA_00904 0.83 +0.8 36,893 + BACOVA_00904 0.83 -0.1 36,895 + BACOVA_00904 0.84 +0.2 36,895 + BACOVA_00904 0.84 -1.6 36,895 + BACOVA_00904 0.84 +0.1 36,896 - BACOVA_00904 0.84 -0.5 36,899 - BACOVA_00904 0.84 -1.3 36,902 - BACOVA_00904 0.84 +1.0 36,904 + BACOVA_00904 0.84 -2.6 36,911 - BACOVA_00904 0.84 -0.4 36,923 + BACOVA_00904 0.85 +0.1 36,952 + BACOVA_00904 0.87 -0.0 37,085 - +0.4 37,085 - -0.7 37,085 - +1.6 37,085 - -0.6 37,103 - +0.2 37,174 + -0.5 37,214 - +0.2 37,224 - -1.7 37,279 + +0.1 37,283 - -0.1 37,307 + +0.8 37,319 + +0.1 37,319 + -0.8 37,329 + -1.1 37,330 - +0.9 37,330 - -1.5 37,344 - -0.3 37,401 + -1.7 37,402 - +0.2 37,410 - -0.6 37,419 + -1.7 37,474 - BACOVA_00905 0.15 -0.0 37,483 + BACOVA_00905 0.16 -1.7 37,484 - BACOVA_00905 0.16 +0.4 37,513 + BACOVA_00905 0.19 +0.3 37,513 + BACOVA_00905 0.19 +1.1 37,514 - BACOVA_00905 0.19 +0.8 37,514 - BACOVA_00905 0.19 -2.1 37,514 - BACOVA_00905 0.19 -0.6 37,515 + BACOVA_00905 0.19 -0.9 37,515 + BACOVA_00905 0.19 +0.6 37,516 - BACOVA_00905 0.19 -1.5 37,521 + BACOVA_00905 0.19 +0.6 37,522 - BACOVA_00905 0.20 +0.2 37,540 + BACOVA_00905 0.21 -0.2 37,543 + BACOVA_00905 0.22 -0.6 37,543 + BACOVA_00905 0.22 -0.7 37,544 - BACOVA_00905 0.22 +1.8 37,555 + BACOVA_00905 0.23 -2.2 37,566 + BACOVA_00905 0.24 +0.5 37,576 + BACOVA_00905 0.25 +1.0 37,614 - BACOVA_00905 0.29 -0.4 37,651 + BACOVA_00905 0.33 -1.0 37,651 + BACOVA_00905 0.33 +0.9 37,652 - BACOVA_00905 0.33 -0.1 37,722 + BACOVA_00905 0.40 -1.3 37,723 - BACOVA_00905 0.40 -1.1 37,728 - BACOVA_00905 0.40 +0.0 37,734 - BACOVA_00905 0.41 +0.7 37,754 + BACOVA_00905 0.43 +0.6 37,754 + BACOVA_00905 0.43 -0.8 37,764 + BACOVA_00905 0.44 +0.7 37,769 - BACOVA_00905 0.45 +0.3 37,781 + BACOVA_00905 0.46 +0.1 37,840 + BACOVA_00905 0.52 +0.2 37,840 + BACOVA_00905 0.52 -0.7 37,840 + BACOVA_00905 0.52 +0.4 37,844 + BACOVA_00905 0.52 -0.0 37,844 + BACOVA_00905 0.52 +0.2 37,844 + BACOVA_00905 0.52 -0.2 37,844 + BACOVA_00905 0.52 +0.4 37,844 + BACOVA_00905 0.52 -0.3 37,845 - BACOVA_00905 0.52 -0.4 37,845 - BACOVA_00905 0.52 -1.2 37,845 - BACOVA_00905 0.52 -1.5 37,845 - BACOVA_00905 0.52 +0.8 37,878 + BACOVA_00905 0.56 +0.1 37,904 + BACOVA_00905 0.58 -0.9 37,904 + BACOVA_00905 0.58 -1.2 37,905 - BACOVA_00905 0.58 -1.2 37,905 - BACOVA_00905 0.58 -0.0 37,910 + BACOVA_00905 0.59 +1.2 37,910 + BACOVA_00905 0.59 +0.8 37,911 - BACOVA_00905 0.59 +0.3 37,936 + BACOVA_00905 0.61 -0.3 37,937 - BACOVA_00905 0.62 -0.2 37,986 + BACOVA_00905 0.66 +0.8 37,986 + BACOVA_00905 0.66 -0.3 37,989 - BACOVA_00905 0.67 -0.5 38,032 - BACOVA_00905 0.71 -1.3 38,071 + BACOVA_00905 0.75 -1.4 38,072 - BACOVA_00905 0.75 +0.2 38,072 - BACOVA_00905 0.75 -0.0 38,108 - BACOVA_00905 0.79 -0.3 38,110 + BACOVA_00905 0.79 -1.8 38,114 + BACOVA_00905 0.79 -0.6 38,124 + BACOVA_00905 0.80 -0.1 38,124 + BACOVA_00905 0.80 +0.5 38,125 - BACOVA_00905 0.81 -0.2 38,128 - BACOVA_00905 0.81 -1.0 38,131 - BACOVA_00905 0.81 -0.4 38,154 - BACOVA_00905 0.83 -0.4 38,167 + BACOVA_00905 0.85 -0.5 38,168 - BACOVA_00905 0.85 -0.4 38,212 + BACOVA_00905 0.89 +0.6
Or see this region's nucleotide sequence