Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00831

Experiment: Polygalacturonic 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00830 and BACOVA_00831 are separated by 39 nucleotidesBACOVA_00831 and BACOVA_00832 are separated by 162 nucleotidesBACOVA_00832 and BACOVA_00833 overlap by 4 nucleotides BACOVA_00830: BACOVA_00830 - nitrite reductase, at 81,068 to 82,549 _00830 BACOVA_00831: BACOVA_00831 - cytochrome c nitrate reductase, small subunit, at 82,589 to 83,188 _00831 BACOVA_00832: BACOVA_00832 - hypothetical protein, at 83,351 to 83,842 _00832 BACOVA_00833: BACOVA_00833 - TonB-dependent receptor, at 83,839 to 85,998 _00833 Position (kb) 82 83 84Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 81.637 kb on + strand, within BACOVA_00830at 81.640 kb on - strand, within BACOVA_00830at 81.749 kb on - strand, within BACOVA_00830at 81.754 kb on + strand, within BACOVA_00830at 81.755 kb on - strand, within BACOVA_00830at 81.756 kb on + strand, within BACOVA_00830at 81.756 kb on + strand, within BACOVA_00830at 81.756 kb on + strand, within BACOVA_00830at 81.757 kb on - strand, within BACOVA_00830at 81.762 kb on + strand, within BACOVA_00830at 81.763 kb on - strand, within BACOVA_00830at 81.780 kb on + strand, within BACOVA_00830at 81.781 kb on - strand, within BACOVA_00830at 81.783 kb on + strand, within BACOVA_00830at 81.784 kb on - strand, within BACOVA_00830at 81.784 kb on - strand, within BACOVA_00830at 81.800 kb on + strand, within BACOVA_00830at 81.806 kb on - strand, within BACOVA_00830at 81.834 kb on + strand, within BACOVA_00830at 81.838 kb on + strand, within BACOVA_00830at 81.839 kb on - strand, within BACOVA_00830at 81.839 kb on - strand, within BACOVA_00830at 81.839 kb on - strand, within BACOVA_00830at 81.881 kb on + strand, within BACOVA_00830at 81.881 kb on + strand, within BACOVA_00830at 81.907 kb on + strand, within BACOVA_00830at 81.913 kb on + strand, within BACOVA_00830at 81.948 kb on - strand, within BACOVA_00830at 81.967 kb on + strand, within BACOVA_00830at 81.968 kb on - strand, within BACOVA_00830at 82.036 kb on + strand, within BACOVA_00830at 82.048 kb on + strand, within BACOVA_00830at 82.048 kb on + strand, within BACOVA_00830at 82.048 kb on + strand, within BACOVA_00830at 82.049 kb on - strand, within BACOVA_00830at 82.049 kb on - strand, within BACOVA_00830at 82.054 kb on + strand, within BACOVA_00830at 82.055 kb on - strand, within BACOVA_00830at 82.056 kb on + strand, within BACOVA_00830at 82.056 kb on + strand, within BACOVA_00830at 82.056 kb on + strand, within BACOVA_00830at 82.108 kb on + strand, within BACOVA_00830at 82.108 kb on + strand, within BACOVA_00830at 82.108 kb on + strand, within BACOVA_00830at 82.108 kb on + strand, within BACOVA_00830at 82.109 kb on - strand, within BACOVA_00830at 82.180 kb on + strand, within BACOVA_00830at 82.184 kb on - strand, within BACOVA_00830at 82.240 kb on - strand, within BACOVA_00830at 82.240 kb on - strand, within BACOVA_00830at 82.250 kb on + strand, within BACOVA_00830at 82.287 kb on - strand, within BACOVA_00830at 82.294 kb on + strand, within BACOVA_00830at 82.294 kb on + strand, within BACOVA_00830at 82.294 kb on + strand, within BACOVA_00830at 82.351 kb on - strand, within BACOVA_00830at 82.373 kb on - strand, within BACOVA_00830at 82.488 kb on - strandat 82.488 kb on - strandat 82.552 kb on + strandat 82.552 kb on + strandat 82.552 kb on + strandat 82.553 kb on - strandat 82.553 kb on - strandat 82.571 kb on + strandat 82.572 kb on - strandat 82.574 kb on + strandat 82.575 kb on - strandat 82.594 kb on + strandat 82.739 kb on + strand, within BACOVA_00831at 82.753 kb on + strand, within BACOVA_00831at 82.754 kb on - strand, within BACOVA_00831at 82.754 kb on - strand, within BACOVA_00831at 82.754 kb on - strand, within BACOVA_00831at 82.755 kb on + strand, within BACOVA_00831at 82.787 kb on - strand, within BACOVA_00831at 82.798 kb on + strand, within BACOVA_00831at 82.822 kb on + strand, within BACOVA_00831at 82.823 kb on - strand, within BACOVA_00831at 82.877 kb on - strand, within BACOVA_00831at 82.900 kb on + strand, within BACOVA_00831at 82.915 kb on + strand, within BACOVA_00831at 82.990 kb on + strand, within BACOVA_00831at 83.008 kb on - strand, within BACOVA_00831at 83.008 kb on - strand, within BACOVA_00831at 83.008 kb on - strand, within BACOVA_00831at 83.011 kb on - strand, within BACOVA_00831at 83.062 kb on - strand, within BACOVA_00831at 83.065 kb on + strand, within BACOVA_00831at 83.066 kb on - strand, within BACOVA_00831at 83.066 kb on - strand, within BACOVA_00831at 83.066 kb on - strand, within BACOVA_00831at 83.066 kb on - strand, within BACOVA_00831at 83.080 kb on + strand, within BACOVA_00831at 83.081 kb on - strand, within BACOVA_00831at 83.082 kb on + strand, within BACOVA_00831at 83.083 kb on - strand, within BACOVA_00831at 83.083 kb on - strand, within BACOVA_00831at 83.083 kb on - strand, within BACOVA_00831at 83.083 kb on - strand, within BACOVA_00831at 83.086 kb on + strand, within BACOVA_00831at 83.087 kb on - strand, within BACOVA_00831at 83.087 kb on - strand, within BACOVA_00831at 83.087 kb on - strand, within BACOVA_00831at 83.087 kb on - strand, within BACOVA_00831at 83.146 kb on + strandat 83.148 kb on + strandat 83.189 kb on - strandat 83.213 kb on + strandat 83.241 kb on + strandat 83.241 kb on + strandat 83.242 kb on - strandat 83.242 kb on - strandat 83.242 kb on - strandat 83.246 kb on - strandat 83.276 kb on + strandat 83.281 kb on - strandat 83.344 kb on + strandat 83.352 kb on + strandat 83.389 kb on + strandat 83.416 kb on - strand, within BACOVA_00832at 83.489 kb on + strand, within BACOVA_00832at 83.489 kb on + strand, within BACOVA_00832at 83.490 kb on - strand, within BACOVA_00832at 83.490 kb on - strand, within BACOVA_00832at 83.509 kb on + strand, within BACOVA_00832at 83.510 kb on - strand, within BACOVA_00832at 83.510 kb on - strand, within BACOVA_00832at 83.510 kb on - strand, within BACOVA_00832at 83.538 kb on + strand, within BACOVA_00832at 83.538 kb on + strand, within BACOVA_00832at 83.539 kb on - strand, within BACOVA_00832at 83.539 kb on - strand, within BACOVA_00832at 83.585 kb on - strand, within BACOVA_00832at 83.588 kb on - strand, within BACOVA_00832at 83.617 kb on + strand, within BACOVA_00832at 83.618 kb on - strand, within BACOVA_00832at 83.618 kb on - strand, within BACOVA_00832at 83.794 kb on + strandat 83.795 kb on - strandat 83.795 kb on - strandat 83.873 kb on - strandat 83.886 kb on + strandat 83.886 kb on + strandat 83.887 kb on - strandat 83.937 kb on - strandat 83.954 kb on - strandat 83.954 kb on - strandat 84.006 kb on + strandat 84.073 kb on - strand, within BACOVA_00833at 84.111 kb on + strand, within BACOVA_00833at 84.111 kb on + strand, within BACOVA_00833at 84.112 kb on - strand, within BACOVA_00833at 84.112 kb on - strand, within BACOVA_00833at 84.133 kb on + strand, within BACOVA_00833at 84.134 kb on - strand, within BACOVA_00833at 84.138 kb on + strand, within BACOVA_00833at 84.138 kb on + strand, within BACOVA_00833at 84.139 kb on - strand, within BACOVA_00833

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Per-strain Table

Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C)
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81,637 + BACOVA_00830 0.38 -3.2
81,640 - BACOVA_00830 0.39 -0.0
81,749 - BACOVA_00830 0.46 -0.4
81,754 + BACOVA_00830 0.46 +2.2
81,755 - BACOVA_00830 0.46 -0.3
81,756 + BACOVA_00830 0.46 -0.6
81,756 + BACOVA_00830 0.46 +0.6
81,756 + BACOVA_00830 0.46 -0.9
81,757 - BACOVA_00830 0.46 +1.3
81,762 + BACOVA_00830 0.47 +2.2
81,763 - BACOVA_00830 0.47 +1.2
81,780 + BACOVA_00830 0.48 +0.8
81,781 - BACOVA_00830 0.48 -0.0
81,783 + BACOVA_00830 0.48 -0.1
81,784 - BACOVA_00830 0.48 -0.3
81,784 - BACOVA_00830 0.48 -0.3
81,800 + BACOVA_00830 0.49 -0.1
81,806 - BACOVA_00830 0.50 -1.9
81,834 + BACOVA_00830 0.52 +0.0
81,838 + BACOVA_00830 0.52 -0.2
81,839 - BACOVA_00830 0.52 -2.0
81,839 - BACOVA_00830 0.52 -0.2
81,839 - BACOVA_00830 0.52 -0.7
81,881 + BACOVA_00830 0.55 -1.3
81,881 + BACOVA_00830 0.55 -0.1
81,907 + BACOVA_00830 0.57 -1.4
81,913 + BACOVA_00830 0.57 +1.4
81,948 - BACOVA_00830 0.59 -0.1
81,967 + BACOVA_00830 0.61 +0.3
81,968 - BACOVA_00830 0.61 -0.5
82,036 + BACOVA_00830 0.65 +0.7
82,048 + BACOVA_00830 0.66 +0.5
82,048 + BACOVA_00830 0.66 +0.6
82,048 + BACOVA_00830 0.66 +0.3
82,049 - BACOVA_00830 0.66 +1.5
82,049 - BACOVA_00830 0.66 -0.4
82,054 + BACOVA_00830 0.67 -0.3
82,055 - BACOVA_00830 0.67 -0.1
82,056 + BACOVA_00830 0.67 +1.7
82,056 + BACOVA_00830 0.67 -0.1
82,056 + BACOVA_00830 0.67 +0.2
82,108 + BACOVA_00830 0.70 +0.5
82,108 + BACOVA_00830 0.70 +0.6
82,108 + BACOVA_00830 0.70 -0.9
82,108 + BACOVA_00830 0.70 -0.1
82,109 - BACOVA_00830 0.70 +0.3
82,180 + BACOVA_00830 0.75 -1.7
82,184 - BACOVA_00830 0.75 +0.2
82,240 - BACOVA_00830 0.79 +2.3
82,240 - BACOVA_00830 0.79 -1.6
82,250 + BACOVA_00830 0.80 -0.7
82,287 - BACOVA_00830 0.82 +1.2
82,294 + BACOVA_00830 0.83 -0.1
82,294 + BACOVA_00830 0.83 -0.1
82,294 + BACOVA_00830 0.83 -0.5
82,351 - BACOVA_00830 0.87 -1.0
82,373 - BACOVA_00830 0.88 -0.6
82,488 - -0.9
82,488 - -1.1
82,552 + -0.4
82,552 + +0.2
82,552 + -0.5
82,553 - -1.2
82,553 - +1.2
82,571 + +0.5
82,572 - -0.1
82,574 + +0.1
82,575 - -1.1
82,594 + +0.5
82,739 + BACOVA_00831 0.25 -0.1
82,753 + BACOVA_00831 0.27 -0.0
82,754 - BACOVA_00831 0.28 +1.2
82,754 - BACOVA_00831 0.28 -0.0
82,754 - BACOVA_00831 0.28 -0.4
82,755 + BACOVA_00831 0.28 +1.1
82,787 - BACOVA_00831 0.33 -1.1
82,798 + BACOVA_00831 0.35 +0.3
82,822 + BACOVA_00831 0.39 +0.3
82,823 - BACOVA_00831 0.39 +1.5
82,877 - BACOVA_00831 0.48 -0.4
82,900 + BACOVA_00831 0.52 +0.0
82,915 + BACOVA_00831 0.54 -0.0
82,990 + BACOVA_00831 0.67 +0.8
83,008 - BACOVA_00831 0.70 -0.8
83,008 - BACOVA_00831 0.70 +0.9
83,008 - BACOVA_00831 0.70 -1.1
83,011 - BACOVA_00831 0.70 -0.4
83,062 - BACOVA_00831 0.79 +0.7
83,065 + BACOVA_00831 0.79 +0.1
83,066 - BACOVA_00831 0.80 +1.6
83,066 - BACOVA_00831 0.80 +1.0
83,066 - BACOVA_00831 0.80 +0.7
83,066 - BACOVA_00831 0.80 +0.9
83,080 + BACOVA_00831 0.82 -1.7
83,081 - BACOVA_00831 0.82 +1.6
83,082 + BACOVA_00831 0.82 -1.0
83,083 - BACOVA_00831 0.82 -0.6
83,083 - BACOVA_00831 0.82 -0.1
83,083 - BACOVA_00831 0.82 -1.1
83,083 - BACOVA_00831 0.82 -0.2
83,086 + BACOVA_00831 0.83 +0.1
83,087 - BACOVA_00831 0.83 +0.1
83,087 - BACOVA_00831 0.83 -0.1
83,087 - BACOVA_00831 0.83 -0.6
83,087 - BACOVA_00831 0.83 -0.2
83,146 + +0.2
83,148 + -0.3
83,189 - +1.2
83,213 + +0.1
83,241 + -0.6
83,241 + -1.7
83,242 - +1.6
83,242 - +1.2
83,242 - -1.3
83,246 - +0.4
83,276 + +0.5
83,281 - +2.1
83,344 + +0.4
83,352 + -0.0
83,389 + +0.1
83,416 - BACOVA_00832 0.13 -1.1
83,489 + BACOVA_00832 0.28 -0.9
83,489 + BACOVA_00832 0.28 +0.1
83,490 - BACOVA_00832 0.28 +0.6
83,490 - BACOVA_00832 0.28 +1.0
83,509 + BACOVA_00832 0.32 -0.3
83,510 - BACOVA_00832 0.32 +0.2
83,510 - BACOVA_00832 0.32 +0.9
83,510 - BACOVA_00832 0.32 -0.1
83,538 + BACOVA_00832 0.38 +1.2
83,538 + BACOVA_00832 0.38 +1.6
83,539 - BACOVA_00832 0.38 +0.9
83,539 - BACOVA_00832 0.38 +1.2
83,585 - BACOVA_00832 0.48 +0.0
83,588 - BACOVA_00832 0.48 -0.2
83,617 + BACOVA_00832 0.54 +0.2
83,618 - BACOVA_00832 0.54 -0.5
83,618 - BACOVA_00832 0.54 -0.7
83,794 + +0.4
83,795 - +0.2
83,795 - -0.3
83,873 - -0.4
83,886 + +0.5
83,886 + -0.2
83,887 - +0.7
83,937 - +0.3
83,954 - -0.1
83,954 - +0.5
84,006 + -0.6
84,073 - BACOVA_00833 0.11 -0.4
84,111 + BACOVA_00833 0.13 +1.5
84,111 + BACOVA_00833 0.13 -0.3
84,112 - BACOVA_00833 0.13 +0.3
84,112 - BACOVA_00833 0.13 -0.7
84,133 + BACOVA_00833 0.14 -0.6
84,134 - BACOVA_00833 0.14 +2.2
84,138 + BACOVA_00833 0.14 +0.6
84,138 + BACOVA_00833 0.14 +0.9
84,139 - BACOVA_00833 0.14 +0.7

Or see this region's nucleotide sequence