Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00711

Experiment: Polygalacturonic 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00709 and BACOVA_00710 are separated by 47 nucleotidesBACOVA_00710 and BACOVA_00711 are separated by 29 nucleotidesBACOVA_00711 and BACOVA_00712 are separated by 108 nucleotides BACOVA_00709: BACOVA_00709 - hypothetical protein, at 80,992 to 82,584 _00709 BACOVA_00710: BACOVA_00710 - transcriptional regulator, AraC family, at 82,632 to 83,483 _00710 BACOVA_00711: BACOVA_00711 - hypothetical protein, at 83,513 to 83,629 _00711 BACOVA_00712: BACOVA_00712 - hypothetical protein, at 83,738 to 85,300 _00712 Position (kb) 83 84Strain fitness (log2 ratio) -2 -1 0 1 2at 82.543 kb on + strandat 82.543 kb on + strandat 82.544 kb on - strandat 82.574 kb on - strandat 82.595 kb on - strandat 82.595 kb on - strandat 82.595 kb on - strandat 82.595 kb on - strandat 82.599 kb on + strandat 82.599 kb on + strandat 82.600 kb on - strandat 82.600 kb on - strandat 82.601 kb on + strandat 82.601 kb on + strandat 82.602 kb on - strandat 82.610 kb on + strandat 82.640 kb on + strandat 82.641 kb on - strandat 82.646 kb on + strandat 82.648 kb on + strandat 82.672 kb on + strandat 82.680 kb on - strandat 82.797 kb on - strand, within BACOVA_00710at 82.804 kb on - strand, within BACOVA_00710at 82.804 kb on - strand, within BACOVA_00710at 82.804 kb on - strand, within BACOVA_00710at 82.836 kb on - strand, within BACOVA_00710at 82.836 kb on - strand, within BACOVA_00710at 82.838 kb on + strand, within BACOVA_00710at 82.838 kb on + strand, within BACOVA_00710at 82.839 kb on - strand, within BACOVA_00710at 82.839 kb on - strand, within BACOVA_00710at 82.839 kb on - strand, within BACOVA_00710at 82.884 kb on + strand, within BACOVA_00710at 82.884 kb on + strand, within BACOVA_00710at 82.885 kb on - strand, within BACOVA_00710at 82.885 kb on - strand, within BACOVA_00710at 82.885 kb on - strand, within BACOVA_00710at 82.903 kb on + strand, within BACOVA_00710at 82.917 kb on + strand, within BACOVA_00710at 82.990 kb on + strand, within BACOVA_00710at 83.013 kb on + strand, within BACOVA_00710at 83.018 kb on + strand, within BACOVA_00710at 83.018 kb on + strand, within BACOVA_00710at 83.018 kb on + strand, within BACOVA_00710at 83.019 kb on - strand, within BACOVA_00710at 83.021 kb on + strand, within BACOVA_00710at 83.021 kb on + strand, within BACOVA_00710at 83.021 kb on + strand, within BACOVA_00710at 83.022 kb on - strand, within BACOVA_00710at 83.023 kb on + strand, within BACOVA_00710at 83.023 kb on + strand, within BACOVA_00710at 83.024 kb on - strand, within BACOVA_00710at 83.026 kb on - strand, within BACOVA_00710at 83.036 kb on + strand, within BACOVA_00710at 83.037 kb on - strand, within BACOVA_00710at 83.040 kb on - strand, within BACOVA_00710at 83.040 kb on - strand, within BACOVA_00710at 83.040 kb on - strand, within BACOVA_00710at 83.082 kb on + strand, within BACOVA_00710at 83.095 kb on + strand, within BACOVA_00710at 83.096 kb on - strand, within BACOVA_00710at 83.107 kb on - strand, within BACOVA_00710at 83.160 kb on + strand, within BACOVA_00710at 83.161 kb on - strand, within BACOVA_00710at 83.190 kb on - strand, within BACOVA_00710at 83.190 kb on - strand, within BACOVA_00710at 83.200 kb on - strand, within BACOVA_00710at 83.200 kb on - strand, within BACOVA_00710at 83.203 kb on + strand, within BACOVA_00710at 83.204 kb on - strand, within BACOVA_00710at 83.228 kb on - strand, within BACOVA_00710at 83.257 kb on - strand, within BACOVA_00710at 83.257 kb on - strand, within BACOVA_00710at 83.267 kb on + strand, within BACOVA_00710at 83.268 kb on - strand, within BACOVA_00710at 83.279 kb on + strand, within BACOVA_00710at 83.304 kb on + strand, within BACOVA_00710at 83.355 kb on + strand, within BACOVA_00710at 83.359 kb on - strand, within BACOVA_00710at 83.418 kb on - strandat 83.421 kb on - strandat 83.421 kb on - strandat 83.423 kb on + strandat 83.424 kb on - strandat 83.424 kb on - strandat 83.462 kb on + strandat 83.475 kb on - strandat 83.505 kb on - strandat 83.522 kb on - strandat 83.522 kb on - strandat 83.588 kb on - strand, within BACOVA_00711at 83.639 kb on + strandat 83.639 kb on + strandat 83.640 kb on - strandat 83.642 kb on - strandat 83.650 kb on - strandat 83.650 kb on - strandat 83.694 kb on + strandat 83.694 kb on + strandat 83.695 kb on - strandat 83.695 kb on - strandat 83.713 kb on + strandat 83.716 kb on + strandat 83.716 kb on + strandat 83.721 kb on - strandat 83.756 kb on + strandat 83.772 kb on + strandat 83.780 kb on - strandat 83.794 kb on + strandat 83.794 kb on + strandat 83.803 kb on + strandat 83.803 kb on + strandat 83.829 kb on - strandat 83.858 kb on + strandat 83.859 kb on - strandat 83.859 kb on - strandat 83.859 kb on - strandat 83.866 kb on + strandat 83.867 kb on - strandat 83.891 kb on - strandat 83.906 kb on - strand, within BACOVA_00712at 83.939 kb on - strand, within BACOVA_00712at 83.950 kb on + strand, within BACOVA_00712at 83.991 kb on + strand, within BACOVA_00712at 84.005 kb on - strand, within BACOVA_00712at 84.035 kb on - strand, within BACOVA_00712at 84.036 kb on + strand, within BACOVA_00712at 84.094 kb on + strand, within BACOVA_00712at 84.094 kb on + strand, within BACOVA_00712at 84.095 kb on - strand, within BACOVA_00712at 84.109 kb on + strand, within BACOVA_00712at 84.118 kb on + strand, within BACOVA_00712at 84.136 kb on + strand, within BACOVA_00712at 84.137 kb on - strand, within BACOVA_00712at 84.139 kb on + strand, within BACOVA_00712at 84.140 kb on - strand, within BACOVA_00712at 84.142 kb on + strand, within BACOVA_00712at 84.156 kb on + strand, within BACOVA_00712at 84.174 kb on + strand, within BACOVA_00712at 84.187 kb on - strand, within BACOVA_00712at 84.193 kb on + strand, within BACOVA_00712at 84.220 kb on + strand, within BACOVA_00712at 84.268 kb on + strand, within BACOVA_00712at 84.287 kb on - strand, within BACOVA_00712at 84.309 kb on + strand, within BACOVA_00712at 84.310 kb on - strand, within BACOVA_00712at 84.370 kb on + strand, within BACOVA_00712at 84.391 kb on + strand, within BACOVA_00712at 84.451 kb on + strand, within BACOVA_00712at 84.451 kb on + strand, within BACOVA_00712at 84.452 kb on - strand, within BACOVA_00712at 84.452 kb on - strand, within BACOVA_00712at 84.472 kb on + strand, within BACOVA_00712at 84.473 kb on - strand, within BACOVA_00712at 84.496 kb on + strand, within BACOVA_00712at 84.515 kb on + strand, within BACOVA_00712at 84.516 kb on - strand, within BACOVA_00712at 84.584 kb on - strand, within BACOVA_00712at 84.589 kb on + strand, within BACOVA_00712at 84.610 kb on - strand, within BACOVA_00712

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Per-strain Table

Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C)
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82,543 + +0.8
82,543 + +1.2
82,544 - -0.8
82,574 - +0.5
82,595 - -0.7
82,595 - -0.2
82,595 - +0.2
82,595 - +0.1
82,599 + -1.8
82,599 + +0.8
82,600 - +0.4
82,600 - -0.2
82,601 + +0.2
82,601 + +1.9
82,602 - -0.6
82,610 + +1.3
82,640 + +0.1
82,641 - +0.2
82,646 + -0.2
82,648 + -1.2
82,672 + +0.8
82,680 - -0.3
82,797 - BACOVA_00710 0.19 -1.1
82,804 - BACOVA_00710 0.20 +1.2
82,804 - BACOVA_00710 0.20 +0.5
82,804 - BACOVA_00710 0.20 +0.5
82,836 - BACOVA_00710 0.24 +1.1
82,836 - BACOVA_00710 0.24 -0.0
82,838 + BACOVA_00710 0.24 +0.3
82,838 + BACOVA_00710 0.24 -0.0
82,839 - BACOVA_00710 0.24 +1.4
82,839 - BACOVA_00710 0.24 +0.6
82,839 - BACOVA_00710 0.24 -1.2
82,884 + BACOVA_00710 0.30 -0.4
82,884 + BACOVA_00710 0.30 -0.6
82,885 - BACOVA_00710 0.30 -0.8
82,885 - BACOVA_00710 0.30 +0.3
82,885 - BACOVA_00710 0.30 +0.6
82,903 + BACOVA_00710 0.32 -0.3
82,917 + BACOVA_00710 0.33 -0.5
82,990 + BACOVA_00710 0.42 -0.6
83,013 + BACOVA_00710 0.45 -0.3
83,018 + BACOVA_00710 0.45 +0.8
83,018 + BACOVA_00710 0.45 -0.2
83,018 + BACOVA_00710 0.45 -0.5
83,019 - BACOVA_00710 0.45 +1.3
83,021 + BACOVA_00710 0.46 -2.6
83,021 + BACOVA_00710 0.46 -1.4
83,021 + BACOVA_00710 0.46 +0.8
83,022 - BACOVA_00710 0.46 -0.3
83,023 + BACOVA_00710 0.46 +0.3
83,023 + BACOVA_00710 0.46 +0.1
83,024 - BACOVA_00710 0.46 -0.3
83,026 - BACOVA_00710 0.46 -0.2
83,036 + BACOVA_00710 0.47 -0.0
83,037 - BACOVA_00710 0.48 -0.7
83,040 - BACOVA_00710 0.48 +0.3
83,040 - BACOVA_00710 0.48 +0.4
83,040 - BACOVA_00710 0.48 -0.1
83,082 + BACOVA_00710 0.53 +0.1
83,095 + BACOVA_00710 0.54 -0.5
83,096 - BACOVA_00710 0.54 -0.6
83,107 - BACOVA_00710 0.56 -0.2
83,160 + BACOVA_00710 0.62 +0.1
83,161 - BACOVA_00710 0.62 -0.3
83,190 - BACOVA_00710 0.65 -1.1
83,190 - BACOVA_00710 0.65 +0.7
83,200 - BACOVA_00710 0.67 +0.3
83,200 - BACOVA_00710 0.67 -0.2
83,203 + BACOVA_00710 0.67 -0.7
83,204 - BACOVA_00710 0.67 +0.0
83,228 - BACOVA_00710 0.70 +1.1
83,257 - BACOVA_00710 0.73 +1.3
83,257 - BACOVA_00710 0.73 -1.3
83,267 + BACOVA_00710 0.75 +0.7
83,268 - BACOVA_00710 0.75 -1.0
83,279 + BACOVA_00710 0.76 -2.3
83,304 + BACOVA_00710 0.79 +0.9
83,355 + BACOVA_00710 0.85 +0.6
83,359 - BACOVA_00710 0.85 -0.3
83,418 - +0.9
83,421 - -1.6
83,421 - -0.8
83,423 + -1.3
83,424 - +0.4
83,424 - +1.0
83,462 + -0.1
83,475 - +0.3
83,505 - +0.2
83,522 - -1.6
83,522 - -1.0
83,588 - BACOVA_00711 0.64 -0.4
83,639 + -0.7
83,639 + -1.3
83,640 - +0.8
83,642 - -0.8
83,650 - -0.4
83,650 - +0.2
83,694 + -1.4
83,694 + +0.1
83,695 - +0.7
83,695 - -0.0
83,713 + -0.2
83,716 + +1.1
83,716 + -0.3
83,721 - -0.1
83,756 + -0.3
83,772 + +0.5
83,780 - -0.7
83,794 + -0.3
83,794 + -0.3
83,803 + +0.1
83,803 + -0.1
83,829 - -1.2
83,858 + +0.0
83,859 - +0.4
83,859 - -0.2
83,859 - +0.3
83,866 + +0.4
83,867 - -0.5
83,891 - -0.7
83,906 - BACOVA_00712 0.11 +0.2
83,939 - BACOVA_00712 0.13 -0.7
83,950 + BACOVA_00712 0.14 -0.4
83,991 + BACOVA_00712 0.16 -2.5
84,005 - BACOVA_00712 0.17 -0.4
84,035 - BACOVA_00712 0.19 -2.0
84,036 + BACOVA_00712 0.19 +0.1
84,094 + BACOVA_00712 0.23 +1.3
84,094 + BACOVA_00712 0.23 -0.9
84,095 - BACOVA_00712 0.23 -0.3
84,109 + BACOVA_00712 0.24 +1.1
84,118 + BACOVA_00712 0.24 -0.2
84,136 + BACOVA_00712 0.25 -0.5
84,137 - BACOVA_00712 0.26 -1.2
84,139 + BACOVA_00712 0.26 -0.2
84,140 - BACOVA_00712 0.26 -0.2
84,142 + BACOVA_00712 0.26 -0.1
84,156 + BACOVA_00712 0.27 -1.0
84,174 + BACOVA_00712 0.28 +0.9
84,187 - BACOVA_00712 0.29 +0.7
84,193 + BACOVA_00712 0.29 +0.9
84,220 + BACOVA_00712 0.31 +0.3
84,268 + BACOVA_00712 0.34 +0.0
84,287 - BACOVA_00712 0.35 +0.1
84,309 + BACOVA_00712 0.37 +0.8
84,310 - BACOVA_00712 0.37 -0.4
84,370 + BACOVA_00712 0.40 -1.2
84,391 + BACOVA_00712 0.42 -0.7
84,451 + BACOVA_00712 0.46 +0.4
84,451 + BACOVA_00712 0.46 +0.3
84,452 - BACOVA_00712 0.46 +0.1
84,452 - BACOVA_00712 0.46 -0.5
84,472 + BACOVA_00712 0.47 -0.3
84,473 - BACOVA_00712 0.47 +0.2
84,496 + BACOVA_00712 0.48 -1.3
84,515 + BACOVA_00712 0.50 -0.3
84,516 - BACOVA_00712 0.50 +1.6
84,584 - BACOVA_00712 0.54 +0.2
84,589 + BACOVA_00712 0.54 -0.9
84,610 - BACOVA_00712 0.56 +1.1

Or see this region's nucleotide sequence