Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF959

Experiment: Ying_OrganicAcid7 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF958 and GFF959 are separated by 59 nucleotidesGFF959 and GFF960 are separated by 248 nucleotides GFF958 - Naphthoate synthase (EC 4.1.3.36), at 693,432 to 694,223 GFF958 GFF959 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 694,283 to 695,080 GFF959 GFF960 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 695,329 to 696,585 GFF960 Position (kb) 694 695 696Strain fitness (log2 ratio) -2 -1 0 1 2at 693.326 kb on + strandat 693.327 kb on - strandat 693.327 kb on - strandat 693.351 kb on + strandat 693.351 kb on + strandat 693.352 kb on - strandat 693.371 kb on + strandat 693.381 kb on - strandat 693.381 kb on - strandat 693.381 kb on - strandat 693.520 kb on + strand, within GFF958at 693.520 kb on + strand, within GFF958at 693.520 kb on + strand, within GFF958at 693.520 kb on + strand, within GFF958at 693.520 kb on + strand, within GFF958at 693.520 kb on + strand, within GFF958at 693.520 kb on + strand, within GFF958at 693.520 kb on + strand, within GFF958at 693.521 kb on - strand, within GFF958at 693.521 kb on - strand, within GFF958at 693.521 kb on - strand, within GFF958at 693.523 kb on + strand, within GFF958at 693.523 kb on + strand, within GFF958at 693.523 kb on + strand, within GFF958at 693.524 kb on - strand, within GFF958at 693.524 kb on - strand, within GFF958at 693.524 kb on - strand, within GFF958at 693.524 kb on - strand, within GFF958at 693.524 kb on - strand, within GFF958at 693.524 kb on - strand, within GFF958at 693.524 kb on - strand, within GFF958at 693.724 kb on + strand, within GFF958at 693.739 kb on + strand, within GFF958at 693.739 kb on + strand, within GFF958at 693.739 kb on + strand, within GFF958at 693.739 kb on + strand, within GFF958at 693.739 kb on + strand, within GFF958at 693.739 kb on + strand, within GFF958at 693.740 kb on - strand, within GFF958at 693.740 kb on - strand, within GFF958at 693.740 kb on - strand, within GFF958at 693.740 kb on - strand, within GFF958at 693.740 kb on - strand, within GFF958at 693.740 kb on - strand, within GFF958at 693.740 kb on - strand, within GFF958at 693.740 kb on - strand, within GFF958at 693.740 kb on - strand, within GFF958at 693.740 kb on - strand, within GFF958at 693.740 kb on - strand, within GFF958at 693.740 kb on - strand, within GFF958at 693.740 kb on - strand, within GFF958at 693.784 kb on + strand, within GFF958at 693.784 kb on + strand, within GFF958at 693.784 kb on + strand, within GFF958at 693.784 kb on + strand, within GFF958at 693.785 kb on - strand, within GFF958at 693.785 kb on - strand, within GFF958at 693.785 kb on - strand, within GFF958at 693.785 kb on - strand, within GFF958at 693.785 kb on - strand, within GFF958at 693.785 kb on - strand, within GFF958at 693.785 kb on - strand, within GFF958at 693.785 kb on - strand, within GFF958at 693.785 kb on - strand, within GFF958at 693.785 kb on - strand, within GFF958at 693.785 kb on - strand, within GFF958at 693.816 kb on + strand, within GFF958at 693.816 kb on + strand, within GFF958at 693.816 kb on + strand, within GFF958at 693.817 kb on - strand, within GFF958at 693.817 kb on - strand, within GFF958at 693.817 kb on - strand, within GFF958at 693.817 kb on - strand, within GFF958at 693.817 kb on - strand, within GFF958at 693.907 kb on + strand, within GFF958at 693.908 kb on - strand, within GFF958at 693.977 kb on + strand, within GFF958at 693.978 kb on - strand, within GFF958at 694.000 kb on + strand, within GFF958at 694.103 kb on - strand, within GFF958at 694.177 kb on + strandat 694.177 kb on + strandat 694.177 kb on + strandat 694.177 kb on + strandat 694.177 kb on + strandat 694.177 kb on + strandat 694.178 kb on - strandat 694.178 kb on - strandat 694.178 kb on - strandat 694.202 kb on - strandat 694.244 kb on + strandat 694.245 kb on - strandat 694.284 kb on + strandat 694.285 kb on - strandat 694.299 kb on + strandat 694.299 kb on + strandat 694.300 kb on - strandat 694.300 kb on - strandat 694.382 kb on - strand, within GFF959at 694.382 kb on - strand, within GFF959at 694.453 kb on + strand, within GFF959at 694.453 kb on + strand, within GFF959at 694.453 kb on + strand, within GFF959at 694.453 kb on + strand, within GFF959at 694.453 kb on + strand, within GFF959at 694.453 kb on + strand, within GFF959at 694.453 kb on + strand, within GFF959at 694.453 kb on + strand, within GFF959at 694.453 kb on + strand, within GFF959at 694.453 kb on + strand, within GFF959at 694.453 kb on + strand, within GFF959at 694.454 kb on - strand, within GFF959at 694.454 kb on - strand, within GFF959at 694.454 kb on - strand, within GFF959at 694.454 kb on - strand, within GFF959at 694.454 kb on - strand, within GFF959at 694.454 kb on - strand, within GFF959at 694.454 kb on - strand, within GFF959at 694.454 kb on - strand, within GFF959at 694.454 kb on - strand, within GFF959at 694.454 kb on - strand, within GFF959at 694.454 kb on - strand, within GFF959at 694.501 kb on + strand, within GFF959at 694.510 kb on + strand, within GFF959at 694.511 kb on - strand, within GFF959at 694.526 kb on + strand, within GFF959at 694.526 kb on + strand, within GFF959at 694.526 kb on + strand, within GFF959at 694.526 kb on + strand, within GFF959at 694.527 kb on - strand, within GFF959at 694.527 kb on - strand, within GFF959at 694.549 kb on - strand, within GFF959at 694.611 kb on + strand, within GFF959at 694.611 kb on + strand, within GFF959at 694.611 kb on + strand, within GFF959at 694.611 kb on + strand, within GFF959at 694.611 kb on + strand, within GFF959at 694.611 kb on + strand, within GFF959at 694.611 kb on + strand, within GFF959at 694.611 kb on + strand, within GFF959at 694.611 kb on + strand, within GFF959at 694.612 kb on - strand, within GFF959at 694.612 kb on - strand, within GFF959at 694.612 kb on - strand, within GFF959at 694.612 kb on - strand, within GFF959at 694.612 kb on - strand, within GFF959at 694.612 kb on - strand, within GFF959at 694.731 kb on + strand, within GFF959at 694.731 kb on + strand, within GFF959at 694.731 kb on + strand, within GFF959at 694.731 kb on + strand, within GFF959at 694.732 kb on - strand, within GFF959at 694.732 kb on - strand, within GFF959at 694.732 kb on - strand, within GFF959at 694.732 kb on - strand, within GFF959at 695.066 kb on + strandat 695.066 kb on + strandat 695.066 kb on + strandat 695.067 kb on - strandat 695.080 kb on + strandat 695.080 kb on + strandat 695.080 kb on + strandat 695.081 kb on - strandat 695.102 kb on - strandat 695.194 kb on + strandat 695.217 kb on + strandat 695.217 kb on + strandat 695.217 kb on + strandat 695.218 kb on - strandat 695.218 kb on - strandat 695.218 kb on - strandat 695.218 kb on - strandat 695.218 kb on - strandat 695.281 kb on + strandat 695.282 kb on - strandat 695.282 kb on - strandat 695.282 kb on - strandat 695.282 kb on - strandat 695.282 kb on - strandat 695.330 kb on + strandat 695.330 kb on + strandat 695.330 kb on + strandat 695.331 kb on - strandat 695.394 kb on - strandat 695.394 kb on - strandat 695.394 kb on - strandat 695.394 kb on - strandat 695.394 kb on - strandat 695.618 kb on + strand, within GFF960at 695.618 kb on + strand, within GFF960at 695.618 kb on + strand, within GFF960at 695.618 kb on + strand, within GFF960at 695.618 kb on + strand, within GFF960at 695.618 kb on + strand, within GFF960at 695.618 kb on + strand, within GFF960at 695.618 kb on + strand, within GFF960at 695.618 kb on + strand, within GFF960at 695.619 kb on - strand, within GFF960at 695.619 kb on - strand, within GFF960at 695.619 kb on - strand, within GFF960at 695.619 kb on - strand, within GFF960at 695.619 kb on - strand, within GFF960at 695.639 kb on + strand, within GFF960at 695.639 kb on + strand, within GFF960at 695.639 kb on + strand, within GFF960at 695.639 kb on + strand, within GFF960at 695.639 kb on + strand, within GFF960at 695.639 kb on + strand, within GFF960at 695.640 kb on - strand, within GFF960at 695.640 kb on - strand, within GFF960at 695.640 kb on - strand, within GFF960at 695.640 kb on - strand, within GFF960at 695.643 kb on - strand, within GFF960at 695.643 kb on - strand, within GFF960at 695.690 kb on + strand, within GFF960at 695.690 kb on + strand, within GFF960at 695.691 kb on - strand, within GFF960at 695.691 kb on - strand, within GFF960at 695.691 kb on - strand, within GFF960at 695.825 kb on + strand, within GFF960at 695.825 kb on + strand, within GFF960at 695.826 kb on - strand, within GFF960at 695.826 kb on - strand, within GFF960at 695.826 kb on - strand, within GFF960at 695.826 kb on - strand, within GFF960at 695.826 kb on - strand, within GFF960at 695.826 kb on - strand, within GFF960at 695.826 kb on - strand, within GFF960at 695.826 kb on - strand, within GFF960at 696.048 kb on - strand, within GFF960

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1
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693,326 + -2.0
693,327 - -0.8
693,327 - -1.5
693,351 + -1.9
693,351 + -0.9
693,352 - -0.2
693,371 + +0.0
693,381 - +0.2
693,381 - +0.0
693,381 - -1.3
693,520 + GFF958 0.11 +0.3
693,520 + GFF958 0.11 -0.6
693,520 + GFF958 0.11 +0.0
693,520 + GFF958 0.11 -0.9
693,520 + GFF958 0.11 -0.2
693,520 + GFF958 0.11 +0.3
693,520 + GFF958 0.11 -0.3
693,520 + GFF958 0.11 -0.4
693,521 - GFF958 0.11 -0.2
693,521 - GFF958 0.11 +0.4
693,521 - GFF958 0.11 +1.2
693,523 + GFF958 0.11 -2.3
693,523 + GFF958 0.11 -1.4
693,523 + GFF958 0.11 -1.3
693,524 - GFF958 0.12 +0.3
693,524 - GFF958 0.12 +0.5
693,524 - GFF958 0.12 +0.5
693,524 - GFF958 0.12 +1.4
693,524 - GFF958 0.12 +0.3
693,524 - GFF958 0.12 -0.2
693,524 - GFF958 0.12 -0.0
693,724 + GFF958 0.37 -0.2
693,739 + GFF958 0.39 -1.0
693,739 + GFF958 0.39 -0.5
693,739 + GFF958 0.39 -0.0
693,739 + GFF958 0.39 -1.6
693,739 + GFF958 0.39 +1.0
693,739 + GFF958 0.39 -0.5
693,740 - GFF958 0.39 +0.4
693,740 - GFF958 0.39 -1.3
693,740 - GFF958 0.39 +0.2
693,740 - GFF958 0.39 +0.4
693,740 - GFF958 0.39 -0.0
693,740 - GFF958 0.39 -0.3
693,740 - GFF958 0.39 +0.2
693,740 - GFF958 0.39 +0.5
693,740 - GFF958 0.39 -1.0
693,740 - GFF958 0.39 -0.7
693,740 - GFF958 0.39 +0.7
693,740 - GFF958 0.39 +0.8
693,740 - GFF958 0.39 -1.9
693,784 + GFF958 0.44 -0.0
693,784 + GFF958 0.44 -1.5
693,784 + GFF958 0.44 +0.1
693,784 + GFF958 0.44 +1.0
693,785 - GFF958 0.45 +0.1
693,785 - GFF958 0.45 -0.6
693,785 - GFF958 0.45 -0.2
693,785 - GFF958 0.45 -0.7
693,785 - GFF958 0.45 -0.5
693,785 - GFF958 0.45 +0.8
693,785 - GFF958 0.45 -0.6
693,785 - GFF958 0.45 -0.3
693,785 - GFF958 0.45 +1.2
693,785 - GFF958 0.45 -0.6
693,785 - GFF958 0.45 +0.4
693,816 + GFF958 0.48 +0.2
693,816 + GFF958 0.48 -0.8
693,816 + GFF958 0.48 +0.3
693,817 - GFF958 0.49 -0.3
693,817 - GFF958 0.49 -0.0
693,817 - GFF958 0.49 -0.9
693,817 - GFF958 0.49 -0.3
693,817 - GFF958 0.49 +0.4
693,907 + GFF958 0.60 -0.3
693,908 - GFF958 0.60 -0.7
693,977 + GFF958 0.69 -0.9
693,978 - GFF958 0.69 +1.5
694,000 + GFF958 0.72 +0.6
694,103 - GFF958 0.85 -0.7
694,177 + -1.2
694,177 + -0.1
694,177 + -0.2
694,177 + -0.3
694,177 + -0.4
694,177 + -0.6
694,178 - -0.9
694,178 - -0.3
694,178 - -0.7
694,202 - -0.2
694,244 + -0.0
694,245 - -1.8
694,284 + -0.1
694,285 - +0.2
694,299 + +0.2
694,299 + +0.9
694,300 - +0.1
694,300 - +0.1
694,382 - GFF959 0.12 +0.1
694,382 - GFF959 0.12 -0.3
694,453 + GFF959 0.21 -0.4
694,453 + GFF959 0.21 +0.1
694,453 + GFF959 0.21 -0.9
694,453 + GFF959 0.21 +0.1
694,453 + GFF959 0.21 -0.3
694,453 + GFF959 0.21 -1.9
694,453 + GFF959 0.21 +0.6
694,453 + GFF959 0.21 -0.2
694,453 + GFF959 0.21 -1.0
694,453 + GFF959 0.21 -1.0
694,453 + GFF959 0.21 -0.8
694,454 - GFF959 0.21 +0.4
694,454 - GFF959 0.21 +0.5
694,454 - GFF959 0.21 -0.6
694,454 - GFF959 0.21 -0.1
694,454 - GFF959 0.21 -0.7
694,454 - GFF959 0.21 +0.5
694,454 - GFF959 0.21 -0.1
694,454 - GFF959 0.21 -0.5
694,454 - GFF959 0.21 -0.2
694,454 - GFF959 0.21 +0.8
694,454 - GFF959 0.21 -0.3
694,501 + GFF959 0.27 -0.1
694,510 + GFF959 0.28 -1.0
694,511 - GFF959 0.29 -0.1
694,526 + GFF959 0.30 +2.0
694,526 + GFF959 0.30 -0.4
694,526 + GFF959 0.30 -0.3
694,526 + GFF959 0.30 -0.8
694,527 - GFF959 0.31 -0.5
694,527 - GFF959 0.31 +0.3
694,549 - GFF959 0.33 +1.5
694,611 + GFF959 0.41 -0.9
694,611 + GFF959 0.41 +0.3
694,611 + GFF959 0.41 +0.3
694,611 + GFF959 0.41 -0.1
694,611 + GFF959 0.41 -0.3
694,611 + GFF959 0.41 -0.5
694,611 + GFF959 0.41 +0.4
694,611 + GFF959 0.41 -0.2
694,611 + GFF959 0.41 -0.1
694,612 - GFF959 0.41 +0.1
694,612 - GFF959 0.41 +0.2
694,612 - GFF959 0.41 +0.1
694,612 - GFF959 0.41 -1.8
694,612 - GFF959 0.41 -0.4
694,612 - GFF959 0.41 +0.3
694,731 + GFF959 0.56 +0.1
694,731 + GFF959 0.56 -0.6
694,731 + GFF959 0.56 +0.0
694,731 + GFF959 0.56 +0.6
694,732 - GFF959 0.56 -0.4
694,732 - GFF959 0.56 -1.1
694,732 - GFF959 0.56 -1.1
694,732 - GFF959 0.56 +0.1
695,066 + -0.4
695,066 + +0.4
695,066 + -0.2
695,067 - +0.4
695,080 + -0.0
695,080 + +0.8
695,080 + +0.3
695,081 - +0.1
695,102 - -0.6
695,194 + -0.2
695,217 + +1.5
695,217 + -0.0
695,217 + -0.0
695,218 - +0.0
695,218 - +0.5
695,218 - -0.5
695,218 - +0.0
695,218 - +0.4
695,281 + -2.5
695,282 - -0.2
695,282 - -1.5
695,282 - +0.2
695,282 - -0.2
695,282 - -0.1
695,330 + +0.5
695,330 + -1.9
695,330 + +0.1
695,331 - -0.1
695,394 - -1.0
695,394 - +1.5
695,394 - +0.2
695,394 - -0.0
695,394 - -0.4
695,618 + GFF960 0.23 +0.6
695,618 + GFF960 0.23 -0.8
695,618 + GFF960 0.23 +0.3
695,618 + GFF960 0.23 -1.2
695,618 + GFF960 0.23 -0.6
695,618 + GFF960 0.23 -0.8
695,618 + GFF960 0.23 +1.9
695,618 + GFF960 0.23 -0.1
695,618 + GFF960 0.23 +0.6
695,619 - GFF960 0.23 +0.2
695,619 - GFF960 0.23 -0.6
695,619 - GFF960 0.23 -0.0
695,619 - GFF960 0.23 +0.5
695,619 - GFF960 0.23 -1.4
695,639 + GFF960 0.25 -0.3
695,639 + GFF960 0.25 -0.1
695,639 + GFF960 0.25 +0.2
695,639 + GFF960 0.25 +1.3
695,639 + GFF960 0.25 +0.1
695,639 + GFF960 0.25 +0.0
695,640 - GFF960 0.25 -0.4
695,640 - GFF960 0.25 -0.3
695,640 - GFF960 0.25 -0.1
695,640 - GFF960 0.25 +0.2
695,643 - GFF960 0.25 -0.9
695,643 - GFF960 0.25 +0.2
695,690 + GFF960 0.29 -0.4
695,690 + GFF960 0.29 +0.7
695,691 - GFF960 0.29 -0.3
695,691 - GFF960 0.29 -0.1
695,691 - GFF960 0.29 +0.4
695,825 + GFF960 0.39 -0.2
695,825 + GFF960 0.39 -1.9
695,826 - GFF960 0.40 -0.1
695,826 - GFF960 0.40 -0.2
695,826 - GFF960 0.40 -1.5
695,826 - GFF960 0.40 -1.0
695,826 - GFF960 0.40 -1.3
695,826 - GFF960 0.40 -1.6
695,826 - GFF960 0.40 +0.3
695,826 - GFF960 0.40 +0.1
696,048 - GFF960 0.57 +1.0

Or see this region's nucleotide sequence