Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5552

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
2,558,770	+				+0.2
2,558,771	-				+0.6
2,558,789	+				+0.1
2,558,789	+				+0.1
2,558,789	+				-0.0
2,558,789	+				-0.1
2,558,790	-				+0.4
2,558,790	-				+0.1
2,558,790	-				-0.1
2,558,790	-				-0.4
2,558,790	-				+1.8
2,558,873	+				-0.6
2,558,874	+				-1.2
2,558,874	+				-1.2
2,558,874	+				+0.1
2,558,874	+				+0.1
2,558,874	+				+0.1
2,558,899	+				-0.4
2,558,899	+				+1.1
2,558,899	+				-1.3
2,558,899	+				-1.3
2,558,900	-				+0.2
2,558,900	-				+0.5
2,558,902	-				+0.4
2,558,903	+				+0.4
2,558,903	+				-1.6
2,558,904	-				+0.4
2,558,941	+				-0.2
2,558,941	+				+1.1
2,558,941	+				-0.0
2,558,941	+				-0.5
2,558,942	-				+0.6
2,558,942	-				-0.1
2,558,942	-				+0.0
2,558,942	-				+1.5
2,558,942	-				+0.3
2,558,942	-				+0.8
2,558,945	+				+0.8
2,558,945	+				+0.6
2,558,945	+				-0.1
2,558,945	+				-0.0
2,558,946	-				-0.3
2,558,946	-				-0.2
2,558,946	-				-0.6
2,558,946	-				+2.1
2,558,949	+				+0.4
2,558,949	+				-0.0
2,558,949	+				-0.7
2,558,949	+				-0.2
2,558,949	+				+0.6
2,558,950	-				+0.1
2,558,997	+				-2.5
2,559,013	+				-0.0
2,559,014	-				+1.5
2,559,360	+		GFF5551	0.46	-0.0
2,559,672	+		GFF5551	0.86	+0.1
2,559,672	+		GFF5551	0.86	+0.6
2,559,672	+		GFF5551	0.86	+0.0
2,559,672	+		GFF5551	0.86	-0.2
2,559,672	+		GFF5551	0.86	-0.3
2,559,672	+		GFF5551	0.86	-0.1
2,559,672	+		GFF5551	0.86	+0.1
2,559,672	+		GFF5551	0.86	+0.4
2,559,672	+		GFF5551	0.86	-0.2
2,559,672	+		GFF5551	0.86	+0.1
2,559,672	+		GFF5551	0.86	-0.0
2,559,673	-		GFF5551	0.86	-0.1
2,559,673	-		GFF5551	0.86	+0.3
2,559,673	-		GFF5551	0.86	-0.3
2,559,673	-		GFF5551	0.86	+0.2
2,559,674	+		GFF5551	0.86	+0.3
2,559,674	+		GFF5551	0.86	-0.5
2,559,674	+		GFF5551	0.86	+0.3
2,559,674	+		GFF5551	0.86	-0.2
2,559,675	-		GFF5551	0.86	-0.2
2,559,675	-		GFF5551	0.86	-1.0
2,559,675	-		GFF5551	0.86	+1.8
2,559,675	-		GFF5551	0.86	+0.7
2,559,675	-		GFF5551	0.86	-0.0
2,559,823	+		GFF5552	0.39	+0.2
2,559,823	+		GFF5552	0.39	+0.6
2,559,824	-		GFF5552	0.39	+0.1
2,559,900	+				-0.3
2,559,900	+				-0.2
2,559,900	+				+0.8
2,559,901	-				+0.0
2,559,901	-				+0.0
2,559,901	-				-0.2
2,559,901	-				-0.4
2,559,901	-				-0.6
2,559,901	-				-0.6
2,559,937	+				+0.2
2,560,021	+				+0.4
2,560,022	-				+1.2
2,560,022	-				-0.6
2,560,084	+				+0.3
2,560,084	+				+0.1
2,560,084	+				-0.5
2,560,084	+				-1.0
2,560,085	-				-0.2
2,560,085	-				+1.4
2,560,163	-				+1.9
2,560,163	-				-0.3
2,560,216	+				-0.4
2,560,216	+				+0.6
2,560,217	-				-0.3
2,560,217	-				+0.1
2,560,288	+		GFF5553	0.11	+0.4
2,560,288	+		GFF5553	0.11	+0.1
2,560,288	+		GFF5553	0.11	-1.5
2,560,288	+		GFF5553	0.11	-0.8
2,560,289	-		GFF5553	0.11	+0.2
2,560,289	-		GFF5553	0.11	-0.9
2,560,289	-		GFF5553	0.11	+0.7
2,560,289	-		GFF5553	0.11	-1.3
2,560,510	+		GFF5553	0.17	+0.1
2,560,511	-		GFF5553	0.17	+0.6
2,560,570	+		GFF5553	0.19	+0.1
2,560,601	+		GFF5553	0.20	+0.3
2,560,601	+		GFF5553	0.20	-0.0
2,560,601	+		GFF5553	0.20	-1.4
2,560,774	+		GFF5553	0.25	+0.5
2,560,801	+		GFF5553	0.26	+0.1
2,560,802	-		GFF5553	0.26	+0.1
2,560,903	+		GFF5553	0.29	-0.1
2,560,903	+		GFF5553	0.29	-0.8
2,560,903	+		GFF5553	0.29	+0.4
2,560,904	-		GFF5553	0.29	+1.1