Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5102

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
2,116,397	+		GFF5099	0.88	-0.4
2,116,398	-		GFF5099	0.89	+1.0
2,116,398	-		GFF5099	0.89	+0.5
2,116,535	+				-0.8
2,116,535	+				-1.9
2,116,536	-				-0.2
2,116,544	+				+1.7
2,116,544	+				+0.4
2,116,545	-				-0.5
2,116,615	+		GFF5100	0.16	-0.1
2,116,860	+				+0.3
2,116,861	-				+1.3
2,116,861	-				-0.5
2,116,885	+				+0.0
2,116,886	-				+0.6
2,117,729	-		GFF5102	0.64	-0.0
2,117,833	+		GFF5102	0.79	-0.4
2,117,834	-		GFF5102	0.79	-0.8
2,117,864	-		GFF5102	0.83	-0.1
2,117,912	-		GFF5102	0.90	-0.7
2,117,912	-		GFF5102	0.90	-0.2
2,117,971	-				-0.2
2,118,015	+				-0.7
2,118,036	+				-1.0
2,118,086	-		GFF5103	0.16	-1.5
2,118,318	+		GFF5103	0.47	+0.4
2,118,552	+		GFF5103	0.79	+0.2
2,118,552	+		GFF5103	0.79	-1.6
2,118,552	+		GFF5103	0.79	-0.6
2,118,553	-		GFF5103	0.79	-0.1
2,118,553	-		GFF5103	0.79	-0.1
2,118,553	-		GFF5103	0.79	+0.1
2,118,727	+				+0.9
2,118,728	-				-0.2
2,118,728	-				-0.2
2,118,729	-				-1.7
2,118,836	+				+0.1
2,118,836	+				+0.8
2,118,836	+				-1.0
2,118,836	+				+0.6
2,118,837	-				-0.1
2,118,837	-				+0.0
2,118,889	+		GFF5104	0.15	-0.3
2,118,965	+		GFF5104	0.38	-0.8
2,118,965	+		GFF5104	0.38	+1.1
2,118,965	+		GFF5104	0.38	+0.3
2,118,965	+		GFF5104	0.38	-0.1
2,118,965	+		GFF5104	0.38	-1.3
2,118,966	-		GFF5104	0.38	+0.2
2,118,966	-		GFF5104	0.38	-0.1
2,118,966	-		GFF5104	0.38	+0.3
2,118,966	-		GFF5104	0.38	+0.5
2,118,966	-		GFF5104	0.38	-0.1
2,118,966	-		GFF5104	0.38	-1.2
2,118,966	-		GFF5104	0.38	+0.3
2,118,966	-		GFF5104	0.38	-1.3