Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5063

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
2,078,945	-		GFF5062	0.25	-1.0
2,079,067	+		GFF5062	0.38	+0.0
2,079,067	+		GFF5062	0.38	+0.1
2,079,067	+		GFF5062	0.38	-0.1
2,079,067	+		GFF5062	0.38	+0.3
2,079,068	-		GFF5062	0.38	+0.4
2,079,068	-		GFF5062	0.38	+0.1
2,079,121	+		GFF5062	0.43	-0.3
2,079,121	+		GFF5062	0.43	-1.4
2,079,266	-		GFF5062	0.58	-0.2
2,079,362	-		GFF5062	0.68	-0.1
2,079,724	+				+0.8
2,079,969	+		GFF5063	0.25	-1.4
2,079,969	+		GFF5063	0.25	+0.3
2,079,969	+		GFF5063	0.25	-0.2
2,079,970	-		GFF5063	0.25	+0.5
2,079,970	-		GFF5063	0.25	-0.1
2,079,970	-		GFF5063	0.25	+0.3
2,080,119	+		GFF5063	0.45	+0.0
2,080,120	-		GFF5063	0.45	+0.0
2,080,120	-		GFF5063	0.45	+0.4
2,080,435	-		GFF5063	0.87	-0.4
2,080,435	-		GFF5063	0.87	+0.1
2,080,473	+				+0.0
2,080,632	-				+0.5
2,080,632	-				+0.5
2,080,635	+				-0.3
2,080,709	+		GFF5064	0.16	+0.3