Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5021

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
2,035,678	+		GFF5020	0.42	-0.1
2,035,678	+		GFF5020	0.42	+0.6
2,035,679	-		GFF5020	0.42	+0.5
2,035,679	-		GFF5020	0.42	+0.0
2,035,679	-		GFF5020	0.42	+0.2
2,035,679	-		GFF5020	0.42	-0.8
2,036,304	-				-0.7
2,036,330	-				-1.8
2,036,347	+				-0.3
2,036,347	+				+0.3
2,036,350	+				-0.0
2,036,351	-				-0.8
2,036,351	-				-0.2
2,036,362	-				+0.9
2,036,572	+		GFF5021	0.21	+0.5
2,036,593	+		GFF5021	0.23	+0.3
2,036,593	+		GFF5021	0.23	+1.6
2,036,746	+		GFF5021	0.40	-1.4
2,036,746	+		GFF5021	0.40	+0.8
2,037,178	+		GFF5021	0.87	+0.2
2,037,178	+		GFF5021	0.87	+0.2
2,037,178	+		GFF5021	0.87	-0.1
2,037,178	+		GFF5021	0.87	-0.2
2,037,178	+		GFF5021	0.87	-1.1
2,037,178	+		GFF5021	0.87	-0.3
2,037,178	+		GFF5021	0.87	-0.4
2,037,178	+		GFF5021	0.87	+0.6
2,037,178	+		GFF5021	0.87	+0.3
2,037,179	-		GFF5021	0.87	+0.7
2,037,179	-		GFF5021	0.87	+0.2
2,037,268	-				-0.2
2,037,268	-				+0.1
2,037,268	-				-0.4
2,037,291	+				-0.2
2,037,292	-				-0.2
2,037,292	-				-0.2
2,037,372	+		GFF5022	0.24	-0.1
2,037,408	+		GFF5022	0.31	-0.3
2,037,432	+		GFF5022	0.37	+1.2
2,037,432	+		GFF5022	0.37	+0.6
2,037,433	-		GFF5022	0.37	-0.4
2,037,582	+		GFF5022	0.68	+0.5
2,038,176	+		GFF5023	0.42	-0.2
2,038,177	-		GFF5023	0.42	-0.7
2,038,177	-		GFF5023	0.42	-0.9
2,038,177	-		GFF5023	0.42	+0.4