Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4827

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
1,838,546	+		GFF4826	0.67	-0.1
1,838,547	-		GFF4826	0.67	+0.7
1,838,601	-		GFF4826	0.70	-0.6
1,838,804	+		GFF4826	0.79	-0.1
1,838,888	+		GFF4826	0.83	+0.2
1,838,888	+		GFF4826	0.83	+0.4
1,838,888	+		GFF4826	0.83	-0.4
1,838,889	-		GFF4826	0.83	-0.2
1,838,889	-		GFF4826	0.83	-0.8
1,839,126	-				+0.7
1,839,242	+				-0.4
1,839,713	+		GFF4827	0.62	+0.3
1,839,713	+		GFF4827	0.62	-0.1
1,839,917	+		GFF4827	0.90	+0.2
1,839,918	-		GFF4827	0.90	-0.0
1,839,947	+				-0.0
1,839,948	-				+0.4
1,839,948	-				-0.6
1,839,948	-				-0.1
1,840,472	-		GFF4828	0.21	-0.3
1,840,717	+		GFF4828	0.36	+0.0
1,840,739	-		GFF4828	0.37	-0.5
1,840,759	+		GFF4828	0.39	+0.2
1,840,760	-		GFF4828	0.39	-0.7
1,840,760	-		GFF4828	0.39	-0.1
1,840,768	+		GFF4828	0.39	+0.1
1,840,768	+		GFF4828	0.39	+0.6
1,840,768	+		GFF4828	0.39	-0.2
1,840,769	-		GFF4828	0.39	+0.3
1,840,834	+		GFF4828	0.43	-0.0
1,840,834	+		GFF4828	0.43	-0.2
1,840,834	+		GFF4828	0.43	+0.4
1,840,834	+		GFF4828	0.43	-0.3
1,840,835	-		GFF4828	0.43	+0.4
1,840,835	-		GFF4828	0.43	+0.1
1,840,835	-		GFF4828	0.43	+0.5
1,840,835	-		GFF4828	0.43	+0.6
1,840,891	+		GFF4828	0.47	+0.1
1,840,892	-		GFF4828	0.47	-1.4
1,840,892	-		GFF4828	0.47	-0.7