Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4738

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
1,695,333	-		GFF4737	0.56	-0.3
1,695,389	+		GFF4737	0.64	-0.5
1,695,390	-		GFF4737	0.64	-0.2
1,695,390	-		GFF4737	0.64	-0.3
1,695,390	-		GFF4737	0.64	+0.1
1,695,390	-		GFF4737	0.64	-0.0
1,695,659	-				+0.3
1,695,687	-				+0.5
1,695,725	+				+0.4
1,695,725	+				-0.0
1,695,725	+				-0.3
1,695,725	+				+0.0
1,695,725	+				+1.0
1,695,725	+				+0.2
1,695,725	+				+0.1
1,695,726	-				-0.4
1,695,726	-				-0.0
1,695,726	-				+2.4
1,695,726	-				-0.2
1,695,726	-				-0.4
1,695,782	+				+0.8
1,695,782	+				+0.6
1,695,782	+				+0.6
1,695,782	+				-1.4
1,695,782	+				-0.6
1,695,782	+				+0.5
1,695,782	+				+0.0
1,695,782	+				+1.1
1,695,783	-				+0.3
1,695,783	-				-0.4
1,695,783	-				-0.2
1,695,783	-				+1.1
1,695,783	-				+0.3
1,695,783	-				+1.1
1,695,783	-				+0.1
1,695,783	-				+0.4
1,695,783	-				+0.4
1,695,789	+				-0.3
1,695,829	-				-1.2
1,695,872	+				+0.3
1,695,873	-				-0.1
1,696,049	+				-0.3
1,696,050	-				+0.6
1,696,050	-				-0.0
1,696,196	+				-1.1
1,696,196	+				-0.4
1,696,385	+				+0.3
1,696,385	+				-0.2
1,696,385	+				-0.3
1,696,385	+				-0.0
1,696,385	+				+0.1
1,696,385	+				+1.2
1,696,385	+				-1.0
1,696,386	-				-1.2
1,696,386	-				+0.2
1,696,386	-				+0.1
1,696,386	-				-0.5
1,696,386	-				+0.7
1,696,386	-				+0.2
1,696,386	-				+0.2
1,696,670	+				+0.4
1,696,670	+				+0.1
1,696,670	+				-0.2
1,696,671	-				+1.1
1,696,671	-				+0.1
1,696,671	-				+0.1
1,696,671	-				-0.0
1,696,671	-				-0.1
1,697,007	-				+0.0
1,697,075	+				-0.6
1,697,075	+				-0.5
1,697,076	-				-0.3
1,697,076	-				-0.5
1,697,076	-				-0.2
1,697,123	+				-0.2
1,697,124	-				-0.4
1,697,360	+		GFF4738	0.11	+0.4
1,697,360	+		GFF4738	0.11	+0.1
1,697,360	+		GFF4738	0.11	-0.2
1,697,360	+		GFF4738	0.11	+1.6
1,697,361	-		GFF4738	0.11	+0.4
1,698,098	+		GFF4738	0.17	+0.2
1,698,144	-		GFF4738	0.18	-0.6
1,698,144	-		GFF4738	0.18	+0.1
1,698,182	+		GFF4738	0.18	-0.5
1,698,182	+		GFF4738	0.18	-0.2
1,698,183	-		GFF4738	0.18	-0.1
1,698,183	-		GFF4738	0.18	-0.0
1,698,506	+		GFF4738	0.20	+0.6
1,698,507	-		GFF4738	0.20	-0.4
1,698,644	+		GFF4738	0.21	+1.6
1,698,645	-		GFF4738	0.21	-0.2
1,698,740	+		GFF4738	0.22	-0.1
1,699,518	-		GFF4738	0.28	-0.1
1,699,958	+		GFF4738	0.32	-0.7
1,699,959	-		GFF4738	0.32	+2.0
1,701,077	+		GFF4738	0.41	-0.4
1,701,077	+		GFF4738	0.41	-0.2
1,701,077	+		GFF4738	0.41	-0.0
1,701,078	-		GFF4738	0.41	+0.4
1,701,171	-		GFF4738	0.41	-0.1
1,701,171	-		GFF4738	0.41	-0.6
1,701,245	+		GFF4738	0.42	-0.0
1,701,362	+		GFF4738	0.43	+0.3
1,701,512	+		GFF4738	0.44	-0.1
1,701,603	-		GFF4738	0.45	+0.2
1,701,707	+		GFF4738	0.46	+0.2
1,701,707	+		GFF4738	0.46	-0.3
1,701,708	-		GFF4738	0.46	-0.0
1,701,837	-		GFF4738	0.47	+1.7
1,701,837	-		GFF4738	0.47	-1.0
1,701,837	-		GFF4738	0.47	-0.4
1,701,953	+		GFF4738	0.48	-0.4
1,701,953	+		GFF4738	0.48	+0.1
1,701,953	+		GFF4738	0.48	+0.2
1,701,990	-		GFF4738	0.48	-0.3
1,702,079	+		GFF4738	0.49	-0.1
1,702,227	-		GFF4738	0.50	-1.1
1,702,227	-		GFF4738	0.50	-0.4
1,702,227	-		GFF4738	0.50	+0.2
1,702,227	-		GFF4738	0.50	-0.2
1,702,230	-		GFF4738	0.50	-0.3
1,702,242	-		GFF4738	0.50	-0.4
1,702,259	+		GFF4738	0.50	+0.6
1,703,076	-		GFF4738	0.56	-0.4
1,703,097	+		GFF4738	0.57	-0.8
1,703,097	+		GFF4738	0.57	+0.9
1,703,117	+		GFF4738	0.57	-2.4
1,703,502	-		GFF4738	0.60	-0.3
1,703,502	-		GFF4738	0.60	-1.8
1,703,574	-		GFF4738	0.60	+1.0
1,703,900	+		GFF4738	0.63	-0.0
1,703,901	-		GFF4738	0.63	-0.9
1,704,089	+		GFF4738	0.64	-0.0
1,704,089	+		GFF4738	0.64	-0.3
1,704,089	+		GFF4738	0.64	+1.6
1,704,089	+		GFF4738	0.64	-0.3
1,704,090	-		GFF4738	0.64	-0.5
1,704,090	-		GFF4738	0.64	-0.3
1,704,263	+		GFF4738	0.66	+0.1
1,704,263	+		GFF4738	0.66	-2.7
1,704,263	+		GFF4738	0.66	+0.6
1,704,263	+		GFF4738	0.66	-0.2
1,704,263	+		GFF4738	0.66	-0.6
1,704,264	-		GFF4738	0.66	-0.0
1,704,264	-		GFF4738	0.66	-0.5
1,704,264	-		GFF4738	0.66	-1.0
1,704,272	+		GFF4738	0.66	+0.8
1,704,272	+		GFF4738	0.66	+0.2
1,704,273	-		GFF4738	0.66	-0.6
1,704,273	-		GFF4738	0.66	+0.2
1,704,564	+		GFF4738	0.68	+0.8
1,704,564	+		GFF4738	0.68	-0.9
1,704,564	+		GFF4738	0.68	+0.4
1,704,565	-		GFF4738	0.68	-0.2
1,704,565	-		GFF4738	0.68	-0.2
1,704,565	-		GFF4738	0.68	+0.6
1,704,566	-		GFF4738	0.68	+0.5
1,704,683	+		GFF4738	0.69	+0.9
1,704,683	+		GFF4738	0.69	+0.1
1,704,683	+		GFF4738	0.69	-0.2
1,704,683	+		GFF4738	0.69	+0.7
1,704,684	-		GFF4738	0.69	+0.2
1,704,867	-		GFF4738	0.71	-0.8
1,704,867	-		GFF4738	0.71	+0.7
1,704,944	+		GFF4738	0.71	+0.6
1,704,944	+		GFF4738	0.71	+0.8
1,705,218	-		GFF4738	0.73	+0.9
1,705,691	+		GFF4738	0.77	-0.7
1,705,692	-		GFF4738	0.77	-0.1
1,705,692	-		GFF4738	0.77	+0.9
1,705,880	+		GFF4738	0.79	+0.0
1,705,880	+		GFF4738	0.79	+0.1
1,705,880	+		GFF4738	0.79	+0.2
1,705,880	+		GFF4738	0.79	-0.4
1,705,881	-		GFF4738	0.79	-0.3
1,705,881	-		GFF4738	0.79	-0.3
1,705,967	+		GFF4738	0.79	+0.2
1,705,967	+		GFF4738	0.79	-0.1
1,705,968	-		GFF4738	0.79	+0.7
1,706,063	+		GFF4738	0.80	-0.7
1,706,063	+		GFF4738	0.80	-0.4
1,706,063	+		GFF4738	0.80	+0.6
1,706,063	+		GFF4738	0.80	-0.4
1,706,064	-		GFF4738	0.80	-0.5
1,706,064	-		GFF4738	0.80	-0.5
1,706,084	+		GFF4738	0.80	+0.8
1,706,084	+		GFF4738	0.80	-0.2
1,706,085	-		GFF4738	0.80	-0.7
1,706,387	+		GFF4738	0.83	-0.0
1,706,660	+		GFF4738	0.85	+0.2
1,706,831	+		GFF4738	0.86	-0.2
1,706,831	+		GFF4738	0.86	-0.8
1,706,832	-		GFF4738	0.86	-0.7
1,706,832	-		GFF4738	0.86	+1.0
1,708,464	-				-0.2
1,708,770	+		GFF4739	0.13	+1.1
1,708,827	+		GFF4739	0.21	+0.8
1,708,861	-		GFF4739	0.25	-0.4
1,709,055	+		GFF4739	0.50	-0.1
1,709,056	-		GFF4739	0.51	+0.1
1,709,339	+		GFF4739	0.87	-0.2