Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4717

Experiment: Ying_OrganicAcid7 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4716 and GFF4717 are separated by 26 nucleotidesGFF4717 and GFF4718 overlap by 4 nucleotides GFF4716 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 1,668,511 to 1,669,503 GFF4716 GFF4717 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 1,669,530 to 1,670,402 GFF4717 GFF4718 - hypothetical protein, at 1,670,399 to 1,671,271 GFF4718 Position (kb) 1669 1670 1671Strain fitness (log2 ratio) -1 0 1at 1669.089 kb on - strand, within GFF4716at 1669.667 kb on - strand, within GFF4717at 1669.867 kb on + strand, within GFF4717at 1669.867 kb on + strand, within GFF4717at 1670.424 kb on + strandat 1670.724 kb on + strand, within GFF4718at 1670.724 kb on + strand, within GFF4718at 1670.724 kb on + strand, within GFF4718at 1670.957 kb on - strand, within GFF4718

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1
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1,669,089 - GFF4716 0.58 -0.0
1,669,667 - GFF4717 0.16 -0.1
1,669,867 + GFF4717 0.39 -0.7
1,669,867 + GFF4717 0.39 -0.8
1,670,424 + -0.1
1,670,724 + GFF4718 0.37 +0.5
1,670,724 + GFF4718 0.37 +0.0
1,670,724 + GFF4718 0.37 +0.4
1,670,957 - GFF4718 0.64 +0.8

Or see this region's nucleotide sequence