Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4488

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
1,413,088	-				-0.1
1,413,965	+		GFF4488	0.14	+0.7
1,413,966	-		GFF4488	0.14	-0.3
1,413,966	-		GFF4488	0.14	-0.2
1,414,155	-		GFF4488	0.33	-0.5
1,414,259	+		GFF4488	0.44	-1.2
1,414,259	+		GFF4488	0.44	+1.3
1,414,260	-		GFF4488	0.44	+0.2
1,414,260	-		GFF4488	0.44	-0.7
1,414,289	+		GFF4488	0.47	+0.3
1,414,290	-		GFF4488	0.47	-1.3
1,414,292	+		GFF4488	0.47	-0.2
1,414,292	+		GFF4488	0.47	-0.1
1,414,364	+		GFF4488	0.54	+0.3
1,414,365	-		GFF4488	0.54	-0.0
1,414,451	+		GFF4488	0.63	+0.0
1,414,451	+		GFF4488	0.63	+0.6
1,414,451	+		GFF4488	0.63	+0.2
1,414,598	+		GFF4488	0.78	+0.4
1,414,598	+		GFF4488	0.78	-0.8
1,414,599	-		GFF4488	0.78	-0.2
1,414,700	+		GFF4488	0.88	+0.8
1,414,700	+		GFF4488	0.88	+0.0
1,414,844	-				-1.0
1,414,870	+				+0.2
1,414,870	+				+0.1
1,415,029	+		GFF4489	0.24	-0.1
1,415,030	-		GFF4489	0.24	-0.9
1,415,030	-		GFF4489	0.24	+1.2
1,415,203	+		GFF4489	0.43	+0.4
1,415,251	+		GFF4489	0.48	+0.3
1,415,261	-		GFF4489	0.49	-0.2
1,415,365	+		GFF4489	0.61	+1.1
1,415,365	+		GFF4489	0.61	-1.2
1,415,365	+		GFF4489	0.61	+0.7
1,415,366	-		GFF4489	0.61	+1.0
1,415,366	-		GFF4489	0.61	+1.8
1,415,413	+		GFF4489	0.66	-0.3
1,415,414	-		GFF4489	0.66	+0.2
1,415,530	+		GFF4489	0.79	+0.3
1,415,530	+		GFF4489	0.79	-0.2
1,415,545	+		GFF4489	0.81	+0.2
1,415,545	+		GFF4489	0.81	-0.5
1,415,545	+		GFF4489	0.81	-0.3
1,415,545	+		GFF4489	0.81	-1.0
1,415,545	+		GFF4489	0.81	-0.9
1,415,546	-		GFF4489	0.81	+0.7
1,415,546	-		GFF4489	0.81	-0.5
1,415,546	-		GFF4489	0.81	-0.4
1,415,546	-		GFF4489	0.81	-0.7
1,415,546	-		GFF4489	0.81	+0.5
1,415,546	-		GFF4489	0.81	+1.0
1,415,546	-		GFF4489	0.81	+0.2
1,415,632	+				-0.2