Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4421

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
1,351,146	-		GFF4419	0.29	-1.0
1,351,355	+				+0.6
1,351,355	+				-0.3
1,351,356	-				-0.2
1,351,950	-		GFF4420	0.72	-0.1
1,352,029	+				-0.7
1,352,083	+				+1.3
1,352,211	-				-0.7
1,352,707	+		GFF4421	0.51	-1.0
1,352,708	-		GFF4421	0.51	-1.0
1,352,790	+		GFF4421	0.58	-0.2
1,352,790	+		GFF4421	0.58	-0.7
1,352,928	+		GFF4421	0.70	+0.9
1,352,999	-		GFF4421	0.76	+0.3
1,353,037	-		GFF4421	0.79	-1.0
1,353,150	+		GFF4421	0.89	-0.4
1,353,150	+		GFF4421	0.89	-0.9
1,353,575	+		GFF4422	0.13	+0.4
1,353,575	+		GFF4422	0.13	-0.3
1,353,576	-		GFF4422	0.13	-0.3
1,353,576	-		GFF4422	0.13	-0.7
1,353,623	+		GFF4422	0.16	+0.2
1,353,624	-		GFF4422	0.16	+1.1
1,353,624	-		GFF4422	0.16	+0.5
1,353,995	+		GFF4422	0.39	+0.1
1,353,996	-		GFF4422	0.39	-0.5
1,354,020	-		GFF4422	0.40	+0.3
1,354,109	+		GFF4422	0.46	+0.2